Parental gene:

DDX50, ENSCJAG00000018844

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:55284009..55327675(-)


>ENSCJAG00000018844
ATGCCTGGGAAACTCCTCTGGGGGGACATTATGGAGCTGGAAGCACCCTTGGAGGAGTCCGAGAGCCAGAAGAAGGAGAG
GCAAAAGAGTGACAGAAGGAAGTCAAGACACCATTATGATTCAGATGAGAAATCAGAAACAAGAGAAAATGGTGTTACAG
ATGACCTGGATGCTCCCAAGGCTAAAAAAACTAAAATGAAAGAGAAGCTAAATGGAGACACTGAAGAAGGATTTAACAGA
CTTTCAGATGAATTCTCTAAATCTCATAAGTCAAGAAGAAAAGATCTACCAAATGGAGATATTGATGAATATGAAAAAAA
GTCAAAGCGAGTATCATCCTTAGATAGTTCTACTCATAAATCAAGTGATAATAAACTAGAGGAGACCTTAACACGTGAAC
AGAAAGAAGGAGCCTTCTCCAATTTCCCTATTTCTGAAGAGACTATAAAGCTTCTGAAAGGTCGAGGGGTAACATACCTC
TTTCCTATTCAAGTTAAGACCTTTGGTCCTGTATATGAAGGAAAAGATTTAATAGCTCAAGCACGGACAGGAACAGGAAA
GACATTCTCTTTTGCCATTCCCTTGATTGAAAGACTACAAAGAAATCAAGAAACAATTAAAAAAAGCCGATCACCAAAGG
TACTCGTTTTGGCTCCAACAAGGGAACTGGCAAATCAAGTAGCCAAAGACTTCAAAGATATAACTAGGAAACTCAGTGTG
GCGTGTTTTTATGGTGGAACATCATATCAAAGCCAAATTAATCATATTCGAAATGGTATTGACATCTTGGTTGGAACCCC
TGGTCGTATCAAAGATCATCTGCAGAGTGGCCGGTTGGATCTTTCTAAACTGCGCCATGTTGTACTCGATGAAGTGGATC
AAATGTTAGATTTAGGTTTTGCTGAACAAGTTGAAGATATTATTCATGAATCCTACAAAACGGATTCTGAAGACAATCCT
CAGACTTTACTTTTTTCTGCAACTTGCCCACAGTGGGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATATGAACA
GGTTGACCTTGTTGGAAAAATGACTCAAAAGGCTGCAACCACTGTGGAACATTTGGCCATCCAGTGTCATTGGTCTCAGA
GGCCCGCAGTTATTGGAGATGTCCTTCAAGTCTACAGTGGGTCTGAAGGGAGGGCTATTATTTTCTGTGAGACCAAGAAG
AATGTAACTGAAATGGCCATGAATCCACACATAAAGCAGAATGCCCAGTGTTTACATGGGGACATTGCACAGTCACAAAG
AGAAATTACACTAAAAGGCTTCAGAGAAGGTAGTTTTAAAGTTTTGGTGGCAACCAATGTGGCTGCCCGTGGTTTGGACA
TTCCTGAAGTTGACCTGGTTATTCAAAGTTCTCCTCCTCAGGATGTTGAGTCCTATATCCATCGCTCTGGACGCACAGGT
AGAGCTGGACGGACAGGGATTTGTATATGTTTTTATCAACCAAGAGAAAGAGGTCAACTAAGATACGTGGAGCAAAAAGC
AGGAATTACTTTTAAACGTGTAGGTGTTCCTTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTC
TGGCTTCCGTTTCTTATGCTGCTGTTGATTTTTTCCGACCGTCAGCTCAGAGACTGATAGAAGAGAAAGGGGCAGTGGAT
GCATTGGCTGCAGCCTTAGCCCACATTTCTGGTGCATCAAGCTTTGAACCACGATCTTTGATCACCTCTGATAAGGGATT
TGTGACCATGACTCTGGAAAGCCTAGAGGAAATACAGGATGTCAGCTGTGCTTGGAAAGAACTTAACAGAAAGCTGAGTA
GTAATGCAGTGTCTCAGATTACCAGAATGTGCCTCCTGAAAGGAAATATGGGTGTTTGCTTTGATGTTCCTACAACTGAG
TCAGAAAGGTTACAGGCAGAGTGGCATGATTCCGACTGGATACTTTCAGTGCCAGCCAAATTACCTGAAATTGAAGAATA
TTATGATGGAAACACATCTTCTAATTCCAGACAGAGGAGTGGCTGGTCAAGTGGCCGGTCGGGCCGGTCAGGCCGGTCAG
GTGGTCGATCTGGCGGCCGATCAGGTAGACAGAGTCGACAAGGGAGTCGATCAGGAAGTCGACAAGATGGTAGAAGACGA
AGTGGGAATAGAAATCGATCAAGAAGTGGGGGCCACAAACGGAGTTTTGACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 24 .71 RPM
SRP051959_skeletal_muscle 18 .54 RPM
SRP051959_lymph_node 27 .78 RPM
SRP051959_lung 19 .85 RPM
SRP051959_liver 18 .78 RPM
SRP051959_kidney 20 .61 RPM
SRP051959_heart 20 .98 RPM
SRP051959_colon 19 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009966 within_species_paralog 2 retrogenes
retro_cjac_3639, retro_cjac_3640,
Callithrix jacchus ENSCJAG00000012876 within_species_paralog 1 retrogene
retro_cjac_1912,
Homo sapiens ENSG00000107625 ortholog_one2one 2 retrogenes
retro_hsap_2089, retro_hsap_2866,
Macaca mulatta ENSMMUG00000001006 ortholog_one2one 1 retrogene
retro_mmul_982,
Mus musculus ENSMUSG00000020076 ortholog_one2one 1 retrogene
retro_mmus_3362,
Nomascus leucogenys ENSNLEG00000011631 ortholog_one2one 2 retrogenes
retro_nleu_1300, retro_nleu_609,
Otolemur garnettii ENSOGAG00000001844 ortholog_one2one 2 retrogenes
retro_ogar_1492, retro_ogar_555,
Pongo abelii ENSPPYG00000002390 ortholog_one2one 3 retrogenes
retro_pabe_2007, retro_pabe_2369, retro_pabe_2418,
Pan troglodytes ENSPTRG00000002562 ortholog_one2one 2 retrogenes
retro_ptro_1536, retro_ptro_1938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1298 84.75 62.01
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Download FASTA sequences of all ENSCJAG00000018844 retrocopies