Parental gene:

DDX21, ENSCJAG00000012876

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:55170550..55199158(-)


>ENSCJAG00000012876
ATGCCCGGAAAACTCCGTAGTGACGCTGCTTTGGAGTCAGTCACCGCAGTGAAAAAAGTGGAGACACTGCGAAAGCAAAC
GGAGAAGAAAGAGAAAAAAGAGAAGCCAAAATCTAATAAGATTGAAGAGATAGCAGAGGAGGAAGAAACTATTTCCCCCA
AAGCTAAAAAAGTTAAAAAGAAAGCAGAGCCTTCTGAAGTTGACATGAATTCTTCTAAATCCAACAAGGCAAAAAAGAAA
GAGGAACCATCTCAAGATGACATTTCTCCTAAAACAAAAAGTTTGAGAAAGAAAAAGGAGCCCATTGAAAAGAAAGCTGT
TTCTTCTAAAACCAAAAAAGTGATAAAAAATGAGGAGCCCTCTGAGGAAGAAATAGATGCTCCTAAGCCCAAGAAGATGA
AGAAAGAAAAGGAAATGAATGGAGAAACTGGAGAGAAAAGCCCCAAACTGAAGAATGGATTTCCTCGTTCTGAACCTGAC
TGTAACCCCAATGAAGCTGCCAGTGAAGAAAGTAACAGTGAGATGGAACAGGAAATACCTGTGGAACAAAAAGAAGGTGC
TTTCTCTAATTTTCCCATATCTGAAGAAACTATTAAGCTTCTCAAAGGCCGAGGAGTGACCTTCCTATTTCCTATACAAG
CAAAGACATTCCATCATGTTTACAACGGGAAGGACTTAATTGCACAGGCGCGGACAGGAACTGGGAAGACATTCTCCTTT
GCTATCCCTTTGATTGAGAAACTTCTTGGGGACCTGCAAGACAGGAAGAGAGGCCGTCCCCCTCAGGTACTGGTTCTTGC
ACCTACAAGAGAGTTGGCAAATCAAGTAAGCAAAGACTTCAGTGACATCACAAAAAAGCTGTCAGTGGCTTGTTTTTATG
GTGGAACTCCTTATGGAGGTCAATTTGAACGCATGAGGAATGGATTGATATCTTGTGTGGCCATACAAGAAAAGGTAAAC
CACAAAATCCAAAATGGCCTGGATCTTTTACAGAAATTACCCAGCAGTATTCCTTTGCCTATTGGGAAACCTCTGTCTTC
CAATTTTGTGTCCTCTGTGCCTGACTTGGCCTCAGCTCCCCTCCTCAAAGATTCTGAAGACAATCCCCAAACATTGCTTT
TTTCTGCAACTTGCCCTCATTGGGTATTTAATGTTGCCAAGAAATACATGAAATCTACATATGAACAGGTGGACCTGATT
GGTAAAAAGACTCAGAAAACAGCAATAACCGTGGAGCATCTGGCTATTCAGTGCCACTGGACTCAGAGGGCAGCAGTTAT
TGGGGATGTCATCCGAGTATATAGTGGTCATCAAGGACGTACTATCATCTTTTGTGAAACCAAGAAAGAAGCCCAGGAGC
TGTCCCAGAATTCGGCTATAAAGCAGGATGCCCAGTCATTGCATGGAGACATTCCACAGAAACAAAGGGAAATTACCCTG
AAAGGGTTTAGAAATGGTAGTTTTGGAGTTTTGGTGGCAACCAATGTCGCTGCACGTGGGTTAGACATCCCTGAGGTTGA
TTTGGTTATACAAAGCTCTCCACCAAAGGATGTAGAGTCCTACATTCATCGATCTGGGCGGACGGGCAGAGCTGGAAGGA
CGGGGGTGTGCATCTGCTTTTATCAGCACAAGGAAGAATATCAATTGGTACAAGTGGAACAAAAAGCGGGAATTAAGTTC
AAACGAATAGGTGTTCCTTCTGCAACAGAAATAATAAAAGCCTCCAGCAAAGATGCCATCAGGCTTTTGGATTCCGTGCC
TCCCACTGCCATTAGTCACTTCAAGCAGTCAGCTGAGAAGCTAATAGAGGAGAAGGGAGCTGTGGAAGCTCTGGCAGCAG
CACTGGCCCATATTTCAGGTGCCACATCTGTAGACCAGCGCTCCTTGATCAACTCAAATGTGGGTTTTGTGACAATGATT
TTGCAGTGCTCAATTGAAATGCCAAATATTAGTTATGCTTGGAAAGAACTTAAAGAGCAGCTGGGCGAGGAGATTGATTC
CAAAGTGAAGGGAATGGTTTTTCTCAAAGGAAAGCTGGGCGTTTGCTTTGATGTACCTACCGCGTCAGTAACAGAAATAC
AGGAAAAATGGCGTGATTCACGACGCTGGCAGCTCTCTGTGGCCACAGAGCAACCAGAGCTCGAAGGACCACGGGAAGGA
TATGGAGGCTTCAGGGGTCAGCGGGAAGGGAGTCGAAGCTTCAGGGGACAGCGGGATGGAAACAGAAGATTCAGAGGGCA
GCGGGGAGGCAATAGAGGACCCCGAGGACAGCGATCAGGAGGTGGCAACAGAAGTAACAGATCCCAAGACAAAGGCCAGA
AGCGGAGTTTCAGTAAAGCATTTGGTCGATAA

Library Parental gene expression (RPM)
SRP051959_spleen 50 .29 RPM
SRP051959_skeletal_muscle 32 .74 RPM
SRP051959_lymph_node 50 .96 RPM
SRP051959_lung 36 .03 RPM
SRP051959_liver 38 .40 RPM
SRP051959_kidney 27 .60 RPM
SRP051959_heart 23 .26 RPM
SRP051959_colon 29 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013791 ortholog_one2one 2 retrogenes
retro_cfam_1024, retro_cfam_1925,
Callithrix jacchus ENSCJAG00000009966 within_species_paralog 2 retrogenes
retro_cjac_3639, retro_cjac_3640,
Callithrix jacchus ENSCJAG00000018844 within_species_paralog 1 retrogene
retro_cjac_1298,
Macropus eugenii ENSMEUG00000010586 ortholog_one2one 1 retrogene
retro_meug_1383,
Microcebus murinus ENSMICG00000015112 ortholog_one2one 1 retrogene
retro_mmur_95,
Mus musculus ENSMUSG00000020075 ortholog_one2one 2 retrogenes
retro_mmus_582, retro_mmus_662,
Procavia capensis ENSPCAG00000016697 ortholog_one2one 1 retrogene
retro_pcap_346,
Pongo abelii ENSPPYG00000002389 ortholog_one2one 1 retrogene
retro_pabe_3816,
Tupaia belangeri ENSTBEG00000002310 ortholog_one2one 2 retrogenes
retro_tbel_1590, retro_tbel_4454,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1912 72.93 62.32
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Download FASTA sequences of all ENSCJAG00000012876 retrocopies