RetrogeneDB ID: | retro_cjac_1912 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:56797542..56799004(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX21 | ||
Ensembl ID: | ENSCJAG00000012876 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.93 % |
Parental protein coverage: | 62.32 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 6 |
Parental | MPGKLRSDAALESVTAVKKVETLRKQTEKKEKKEKPKSNKIEEIAEEEETISPKAKKVKKKAEPSEVDMN |
M.GKL..D..LES.TA.KKVETL.KQ.EKKEKKE.PKS...EE.AEEEET.SPKAK.VKK.AEPSEVDMN | |
Retrocopy | MSGKLHTDTGLESDTAMKKVETL*KQDEKKEKKEEPKSSRTEETAEEEETVSPKAKQVKKRAEPSEVDMN |
Parental | SSKSNKAKKKEEPSQDDISPKTKSLRK-KKEP-IEKKAVSSKTKKVI-KNEEPSEEEIDAPKPKKMKKEK |
S.KS.KAKKKEEPSQDDISPKTKSLR..K..P.I.KKAVS.KTK.VI.KNEEPSEE..DAPKPKKMKK.. | |
Retrocopy | SPKSKKAKKKEEPSQDDISPKTKSLREIKRSP<IVKKAVSCKTKQVI>KNEEPSEE*TDAPKPKKMKK*M |
Parental | EMNGETGEKSPKLKNGFPRSEPDCNPNEAASEESNSEMEQEIPVEQKEGAFSNFPISEETIKLLKGRGVT |
E.NG...EKS.KL.NGFP.S.PDCNP.EAASEESNSE.EQEIPVEQ.EG.FSNFPISEETIKLLKG.GVT | |
Retrocopy | EINGKIREKS-KLENGFPHSKPDCNPSEAASEESNSEIEQEIPVEQTEGHFSNFPISEETIKLLKGPGVT |
Parental | FLFPIQAKTFHHVYNGKDLIAQARTGTGKTFSFAIPLIEKLLGDLQDRKRGRP-PQVLVLAPTRELANQV |
FLF.IQAKTF..V..GKDL.A...TGTG.TFSF.IPL.EKL.G.LQ..KRG...PQ.LVLAPTR.L.NQ. | |
Retrocopy | FLFLIQAKTFCQVHSGKDLTARVQTGTGETFSFTIPLTEKLHGELQGKKRGVS<PQGLVLAPTRQLTNQA |
Parental | SKDFSDITKKLSVACFY-GGTPYGGQFERMRNGLISCVAIQEKVNHKIQNGLDL-LQKLPSSIPLPIGKP |
SKDFSDITKKLSVACFY..GTPYGGQFE.MRNG....V.........IQNG....L.KL........... | |
Retrocopy | SKDFSDITKKLSVACFY<CGTPYGGQFEGMRNGIDILVRTPGRIKDHIQNGN*I<LTKLKHVVLDEVDQM |
Parental | LSSNFVSSVPDLASAPLLKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHL |
L...F...V....S....KDSEDNPQTLLFSATCPHW.FNVAKKYMKSTYEQ.DLIGKKTQKTAITV..L | |
Retrocopy | LDMRFADQVEEILSVAYDKDSEDNPQTLLFSATCPHWLFNVAKKYMKSTYEQGDLIGKKTQKTAITVDPL |
Parental | AIQCHWTQ-RAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGF |
A..CHWTQ.RAA.IGDVI..YSGHQG.T.IFC.TKKEA..LSQNSAIKQDAQSLHGDI.QKQR.ITLK.. | |
Retrocopy | ATKCHWTQ>RAAIIGDVI*IYSGHQGCTVIFCKTKKEA*KLSQNSAIKQDAQSLHGDIAQKQRKITLKSL |
Parental | RNGSF |
RNG.F | |
Retrocopy | RNGRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .75 RPM | 29 .55 RPM |
SRP051959_heart | 0 .67 RPM | 23 .26 RPM |
SRP051959_kidney | 0 .89 RPM | 27 .60 RPM |
SRP051959_liver | 0 .87 RPM | 38 .40 RPM |
SRP051959_lung | 0 .98 RPM | 36 .03 RPM |
SRP051959_lymph_node | 1 .19 RPM | 50 .96 RPM |
SRP051959_skeletal_muscle | 0 .72 RPM | 32 .74 RPM |
SRP051959_spleen | 1 .11 RPM | 50 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013791 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009966 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000012876 | 1 retrocopy |
retro_cjac_1912 ,
|
Callithrix jacchus | ENSCJAG00000018844 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010586 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015112 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020075 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000016697 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002389 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002310 | 2 retrocopies |