Parental gene:

PPIL4, ENSCJAG00000019613

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:150289016..150345134(-)


>ENSCJAG00000019613
ATGGCGGTTCTGCTGGAGACCACTTTGGGCGACGTCGTCATCGACTTGTACACCGAGGAGCGGCCGCGTGCCTGCTTGAA
TTTCTTGAAATTGTGCAAGATAAAATATTACAATTATTGCCTTATTCACAATGTACAGAGGGATTTTATCATACAAACTG
GTGATCCTACAGGGACTGGCCGTGGAGGAGAATCTATTTTTGGGTACCAACTGTATGGTGATCAAGCAAGCTTTTTTGAG
GCAGAAAAAGTCCCAAGAATAAAGCACAAGAAGAAAGGCACAGTGTCCATGGTGAACAATGGCAGCGATCAACATGGATC
TCAGTTTCTCATCACTACAGGAGAAAATCTAGATTACCTTGATGGTGTCCATACAGTGTTTGGTGAGGTGACAGAAGGAA
TGGACATAATTAAGAAAATTAATGAGACCTTTGTTGACAAGGACTTTGTACCATATCAGGATATCAGGATAAATCACACG
GTGATTTTAGATGATCCATTTGATGACCCTCCTGATTTATTAATCCCTGATCGATCACCAGAACCTACAAGGGAACAATT
AGATAGTGGTCGAATAGGAGCAGATGAAGAAATTGATGATTTCAAAGGACGATCAGCTGAGGAAGTAGAAGAAATAAAAG
CAGAAAAAGAGGCTAAAACTCAGGCTATACTTTTAGAGATGGTGGGAGACCTACCTGATGCAGATATTAAACCTCCAGAA
AATGTGCTGTTTGTATGTAAATTGAACCCAGTGACCACAGATGAGGATCTGGAAATAATATTCTCTAGATTTGGGCCAAT
AAGAAGTTGTGAAGTTATCCGGGACTGGAAGACAGGAGAGTCCCTCTGTTACGCTTTTATTGAATTTGAAAAGGAGAAAC
ATTGTGAGAAAGCGTTCTTCATAATGGACAATGTACTTATTATAGATGACAGAAGAATACATGTGGATTTTAGCCAGTCT
GTTGCAAAGGTTAAATGGAAAGGAAAAGAAATAGGTGGGAAATACACCAAGAGTGATTTCAAGGAATATGAAAAAGAACA
AAATAATCCATCTAATTTGGTTCTGAAAGATAAAGTAAAGCCCAAACAGGATGCAAAATACGATCTTATACTAGATGAGC
AGGCAGAAGACTCAAAATCAAGTCACTCACACACAAGTAAAAAACACAAGAAGAAAACCCGGCACTGCTCTGAAGAAAAA
GAAGATGAGGACTACATGCCAATCAAAAATCCTAATCAGGATATCTATAGAGAAATGGGGTTTGGTCACTATGAAGAAGA
AGAAAGCTGTTGGGAGAAACAAAAGAGTGAAAAGAGAGATCGAACTCAGAACCGAAGTCGTAGCCGATCTCAAGAGAGGG
ATGGCCATTATAGTAATAGTCACAAATCCAAATACCAAACAGATCTTTACGAAAGAGAAAGGGGTAAAAAGAGAGACCGA
AGCAGAAGTCCAAAGAAATCCAAAGATAAAGAAAAATCTAAGTACAGATGA

Library Parental gene expression (RPM)
SRP051959_spleen 23 .34 RPM
SRP051959_skeletal_muscle 12 .10 RPM
SRP051959_lymph_node 24 .34 RPM
SRP051959_lung 25 .17 RPM
SRP051959_liver 11 .20 RPM
SRP051959_kidney 20 .10 RPM
SRP051959_heart 17 .17 RPM
SRP051959_colon 11 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000003145 other_paralog 5 retrogenes
retro_cjac_129, retro_cjac_1886, retro_cjac_2205, retro_cjac_3120, retro_cjac_4110,
Callithrix jacchus ENSCJAG00000016094 other_paralog 1 retrogene
retro_cjac_1302,
Macaca mulatta ENSMMUG00000023067 ortholog_one2one 1 retrogene
retro_mmul_1715,
Nomascus leucogenys ENSNLEG00000015316 ortholog_one2one 1 retrogene
retro_nleu_173,
Oryctolagus cuniculus ENSOCUG00000007696 ortholog_one2one 2 retrogenes
retro_ocun_661, retro_ocun_892,
Taeniopygia guttata ENSTGUG00000010655 ortholog_one2many 1 retrogene
retro_tgut_16,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2963 94.77 72.78
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Download FASTA sequences of all ENSCJAG00000019613 retrocopies