Parental gene:

ENSCJAG00000003145

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:77324844..77351341(+)


>ENSCJAG00000003145
ATGGCGGTGGCAAATTCAAGCCCTGTTAACCCCGTGGTGTTCTTTGATGTCAGCATTGGCGGTCAGGAAGTTGGCCGCAT
GAAGATCGAGCTCTTTGCAGACGTTGTGCCTAAGACGGCCGAGAACTTTAGGCAGTTCTGCACCGGAGAATTCAGAAAAG
ATGGGGTTCCAATAGGATACAAAGGAAGCACCTTCCACAGGGTCATAAAGGATTTCATGATTCAGGGTGGAGATTTTGTT
AATGGAGATGGTACTGGAGTCGCCAGTATTTACCGGGGGCCATTTGCAGATGAAAATTTTAAACTTAGACACTCAGCTCC
AGGCCTGCTTTCTATGGCAAACAGTGGTCCCAGTACAAATGGCTGTCAGTTCTTTATCACCTGCTCTAAGTGCGACTGGT
TGGATGGGAAGCATGTGGTGTTTGGAAAAATCATCGATGGACTTCTGGTGATGAGAAAGATTGAGAATGTTCCCACAGGC
CCCAACAATAAGCCCAAGCTACCTGTGGTGATCTCACAGTGTGGGGAGATGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 6 .49 RPM
SRP051959_skeletal_muscle 2 .64 RPM
SRP051959_lymph_node 8 .79 RPM
SRP051959_lung 7 .30 RPM
SRP051959_liver 6 .19 RPM
SRP051959_kidney 6 .72 RPM
SRP051959_heart 4 .74 RPM
SRP051959_colon 5 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000526 ortholog_one2many 1 retrogene
retro_amel_1481,
Bos taurus ENSBTAG00000004590 ortholog_one2many 1 retrogene
retro_btau_1530,
Callithrix jacchus ENSCJAG00000016094 within_species_paralog 1 retrogene
retro_cjac_1302,
Callithrix jacchus ENSCJAG00000019613 other_paralog 1 retrogene
retro_cjac_2963,
Cavia porcellus ENSCPOG00000008214 ortholog_one2many 8 retrogenes
retro_cpor_1511, retro_cpor_785, retro_cpor_786, retro_cpor_794, retro_cpor_795, retro_cpor_796, retro_cpor_797, retro_cpor_798,
Dipodomys ordii ENSDORG00000016152 ortholog_one2many 3 retrogenes
retro_dord_151, retro_dord_173, retro_dord_447,
Homo sapiens ENSG00000171960 ortholog_one2many 2 retrogenes
retro_hsap_4740, retro_hsap_928,
Gorilla gorilla ENSGGOG00000022507 ortholog_one2many 2 retrogenes
retro_ggor_2945, retro_ggor_748,
Macropus eugenii ENSMEUG00000001691 ortholog_one2many 1 retrogene
retro_meug_1699,
Myotis lucifugus ENSMLUG00000025400 ortholog_one2many 2 retrogenes
retro_mluc_1922, retro_mluc_2243,
Macaca mulatta ENSMMUG00000013129 ortholog_one2many 1 retrogene
retro_mmul_1124,
Mustela putorius furo ENSMPUG00000013966 ortholog_one2many 2 retrogenes
retro_mputfur_285, retro_mputfur_542,
Mus musculus ENSMUSG00000060288 possible_ortholog 7 retrogenes
retro_mmus_2563, retro_mmus_2873, retro_mmus_3195, retro_mmus_3709, retro_mmus_749, retro_mmus_913, retro_mmus_977,
Nomascus leucogenys ENSNLEG00000012313 ortholog_one2many 2 retrogenes
retro_nleu_1242, retro_nleu_289,
Oryctolagus cuniculus ENSOCUG00000011453 ortholog_one2many 1 retrogene
retro_ocun_1195,
Otolemur garnettii ENSOGAG00000014937 possible_ortholog 1 retrogene
retro_ogar_2368,
Procavia capensis ENSPCAG00000011139 ortholog_one2many 1 retrogene
retro_pcap_81,
Pongo abelii ENSPPYG00000001467 ortholog_one2many 2 retrogenes
retro_pabe_3686, retro_pabe_797,
Pan troglodytes ENSPTRG00000000614 ortholog_one2many 2 retrogenes
retro_ptro_3155, retro_ptro_644,
Pteropus vampyrus ENSPVAG00000005500 ortholog_one2many 1 retrogene
retro_pvam_107,
Rattus norvegicus ENSRNOG00000008489 possible_ortholog 1 retrogene
retro_rnor_2911,
Ictidomys tridecemlineatus ENSSTOG00000000115 ortholog_one2many 2 retrogenes
retro_itri_1248, retro_itri_412,
Tarsius syrichta ENSTSYG00000003182 ortholog_one2many 2 retrogenes
retro_tsyr_224, retro_tsyr_647,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_129 97.74 100.00
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2. retro_cjac_1886 99.44 100.00
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3. retro_cjac_2205 97.35 63.84
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4. retro_cjac_3120 98.31 100.00
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5. retro_cjac_4110 74.83 79.66
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Download FASTA sequences of all ENSCJAG00000003145 retrocopies