RetrogeneDB ID: | retro_cjac_1886 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:13185200..13185731(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023141 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000003145 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK |
MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCT.EFRKDGVPIGYKGSTFHRVIK | |
Retrocopy | MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTREFRKDGVPIGYKGSTFHRVIK |
Parental | DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV |
DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV | |
Retrocopy | DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV |
Parental | FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM |
FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM | |
Retrocopy | FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 5 .77 RPM |
SRP051959_heart | 0 .04 RPM | 4 .74 RPM |
SRP051959_kidney | 0 .11 RPM | 6 .72 RPM |
SRP051959_liver | 0 .09 RPM | 6 .19 RPM |
SRP051959_lung | 0 .03 RPM | 7 .30 RPM |
SRP051959_lymph_node | 0 .14 RPM | 8 .79 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 2 .64 RPM |
SRP051959_spleen | 0 .04 RPM | 6 .49 RPM |