Parental gene: | PARL, ENSCJAG00000021241 |
| Aliases: | None |
| Description: | presenilin associated, rhomboid-like [Source:HGNC Symbol;Acc:18253] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 15:5445537..5502774(-) |
>ENSCJAG00000021241
ATGGCGTGGCGAGGCTGGTCGCAGCGAAGCTGGGGCTGCGGCCCGGCGTGGGCTGCGCCGGTGGGCGGCCGCGGCTGCGA
GGAGCTCACTACGGCCCTAGCCCCGCCGCGGCTGTTCGGACGCAGGTTTACCTTCGTTATTCAGCAAAAATGCGGATTCA
GAAAAGCACCCAGGAAGGTTGAACTTCGAAGATCAGACACAGGGACAAGTGGTAAAGCACACAAGAGAAGTGCTTTGATC
CCTCCTGTGGAAGAAACAGCCTTTTATCCTTCTCCCTATCCTATAAGGACTCTTATAAAACCATTATTTTTTACTGTTGG
GTTTACAGGCTGTGCATTTGGATCAGCTGCTATTTGGCAATATGAATCACTGAAATCCAGGGTCCAGAGTTATTTTGATG
GTATTAAAGCTGATTGGTTGGATAGCATAAGACCACAAAAAAAAGGAGATTTCAGAAAGGAGATTAACAAGTGGTGGAAT
AACCTAAGTGATGGCCAGCGGACTGTGACAGGTATTATAGCTGCAAATGTCCTTGTATTCTGTTTATGGAGAGTGCCATC
TCTGAAGCGGACAATGACCAGATATTTCACGTCGAATCCAGCCTCAAAGGTCCTTTGTTCTCCAATGTTGCTGTCAACAT
TCAGTCATTTCTCCTTAATTCACATGGCAGCAAATATGTATGTTTTGTGGAGCTTCTCTTCCAGCATAGTGAACCTTCTG
GGTCAAGAGCAGTTCATGGCAATGTACCTATCTGCAGGTGTTATTTCCAATTTTGTCAGTTACGTGTGTAAAGTTGCCAC
AGGAAGATATGGACCATCACTTGGTGCATCCGGTGCCATCATGACGGTCCTCGCTGCTGTCTGCACGAAGATGCCAGAAG
GGAGGCTGGCCATTATCTTCCTTCCGATACTCACGTTCACAGCAGGGAATGCCCTAAAAGCCATTATCGCCATGGACACA
GCAGGACTGATCCTGGGATGGAAAGTTTTTGATCATGCAGCACATCTTGGAGGAGCTCTTTTTGGAATATGGTATGTTAC
TTATGGTCATGAACTGATTTGGAAGAACAGGGAGCCTCTAGTGAAAATCTGGCATGAAATAAGGACTGATGGCCCCAAAA
AAGGAGGTGGCTCTAAGTAA
ATGGCGTGGCGAGGCTGGTCGCAGCGAAGCTGGGGCTGCGGCCCGGCGTGGGCTGCGCCGGTGGGCGGCCGCGGCTGCGA
GGAGCTCACTACGGCCCTAGCCCCGCCGCGGCTGTTCGGACGCAGGTTTACCTTCGTTATTCAGCAAAAATGCGGATTCA
GAAAAGCACCCAGGAAGGTTGAACTTCGAAGATCAGACACAGGGACAAGTGGTAAAGCACACAAGAGAAGTGCTTTGATC
CCTCCTGTGGAAGAAACAGCCTTTTATCCTTCTCCCTATCCTATAAGGACTCTTATAAAACCATTATTTTTTACTGTTGG
GTTTACAGGCTGTGCATTTGGATCAGCTGCTATTTGGCAATATGAATCACTGAAATCCAGGGTCCAGAGTTATTTTGATG
GTATTAAAGCTGATTGGTTGGATAGCATAAGACCACAAAAAAAAGGAGATTTCAGAAAGGAGATTAACAAGTGGTGGAAT
AACCTAAGTGATGGCCAGCGGACTGTGACAGGTATTATAGCTGCAAATGTCCTTGTATTCTGTTTATGGAGAGTGCCATC
TCTGAAGCGGACAATGACCAGATATTTCACGTCGAATCCAGCCTCAAAGGTCCTTTGTTCTCCAATGTTGCTGTCAACAT
TCAGTCATTTCTCCTTAATTCACATGGCAGCAAATATGTATGTTTTGTGGAGCTTCTCTTCCAGCATAGTGAACCTTCTG
GGTCAAGAGCAGTTCATGGCAATGTACCTATCTGCAGGTGTTATTTCCAATTTTGTCAGTTACGTGTGTAAAGTTGCCAC
AGGAAGATATGGACCATCACTTGGTGCATCCGGTGCCATCATGACGGTCCTCGCTGCTGTCTGCACGAAGATGCCAGAAG
GGAGGCTGGCCATTATCTTCCTTCCGATACTCACGTTCACAGCAGGGAATGCCCTAAAAGCCATTATCGCCATGGACACA
GCAGGACTGATCCTGGGATGGAAAGTTTTTGATCATGCAGCACATCTTGGAGGAGCTCTTTTTGGAATATGGTATGTTAC
TTATGGTCATGAACTGATTTGGAAGAACAGGGAGCCTCTAGTGAAAATCTGGCATGAAATAAGGACTGATGGCCCCAAAA
AAGGAGGTGGCTCTAAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 15 .84 RPM |
| SRP051959_skeletal_muscle | 15 .37 RPM |
| SRP051959_lymph_node | 19 .54 RPM |
| SRP051959_lung | 14 .58 RPM |
| SRP051959_liver | 14 .43 RPM |
| SRP051959_kidney | 15 .93 RPM |
| SRP051959_heart | 17 .61 RPM |
| SRP051959_colon | 18 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dipodomys ordii | ENSDORG00000014935 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000175193 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000000416 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000033918 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006072 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000006126 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015673 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023222 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1415 | 72.81 | 59.37 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2384 | 72.61 | 62.53 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021241 retrocopies