Parental gene:

PARL, ENSG00000175193

Aliases:PARL, PSARL, PSARL1, PSENIP2, RHBDS1
Description:presenilin associated, rhomboid-like [Source:HGNC Symbol;Acc:18253]
Organism:Human (Homo sapiens)
Coordinates:3:183547172..183602721(-)


>ENSG00000175193
ATGGCGTGGCGAGGCTGGGCGCAGAGAGGCTGGGGCTGCGGCCAGGCGTGGGGTGCGTCGGTGGGCGGCCGCAGCTGCGA
GGAGCTCACTGCGGTCCTAACCCCGCCGCAGCTCCTCGGACGCAGGTTTAACTTCTTTATTCAACAAAAATGCGGATTCA
GAAAAGCACCCAGGAAGGTTGAACCTCGAAGATCAGACCCAGGGACAAGTGGTGAAGCATACAAGAGAAGTGCTTTGATT
CCTCCTGTGGAAGAAACAGTCTTTTATCCTTCTCCCTATCCTATAAGGAGTCTCATAAAACCTTTATTTTTTACTGTTGG
GTTTACAGGCTGTGCATTTGGATCAGCTGCTATTTGGCAATATGAATCACTGAAATCCAGGGTCCAGAGTTATTTTGATG
GTATAAAAGCTGATTGGTTGGATAGCATAAGACCACAAAAAGAAGGAGACTTCAGAAAGGAGATTAACAAGTGGTGGAAT
AACCTAAGTGATGGCCAGCGGACTGTGACAGGTATTATAGCTGCAAATGTCCTTGTATTCTGTTTATGGAGAGTACCTTC
TCTGCAGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAAAGGTCCTTTGTTCTCCAATGTTGCTGTCAACAT
TCAGTCATTTCTCCTTATTTCACATGGCAGCAAATATGTATGTTTTGTGGAGCTTCTCTTCCAGCATAGTGAACATTCTG
GGTCAAGAGCAGTTCATGGCAGTGTACCTATCTGCAGGTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCAC
AGGAAGATATGGACCATCACTTGGTGCATCTGGTGCCATCATGACAGTCCTCGCAGCTGTCTGCACTAAGATCCCAGAAG
GGAGGCTTGCCATTATTTTCCTTCCGATGTTCACGTTCACAGCAGGGAATGCCCTGAAAGCCATTATCGCCATGGATACA
GCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAATATGGTATGTTAC
TTACGGTCATGAACTGATTTGGAAGAACAGGGAGCCGCTAGTGAAAATCTGGCATGAAATAAGGACTAATGGCCCCAAAA
AAGGAGGTGGCTCTAAGTAA

Library Parental gene expression (RPM)
bodymap2_adipose 41 .27 RPM
bodymap2_adrenal 54 .84 RPM
bodymap2_brain 30 .10 RPM
bodymap2_breast 48 .02 RPM
bodymap2_colon 34 .79 RPM
bodymap2_heart 27 .80 RPM
bodymap2_kidney 31 .02 RPM
bodymap2_liver 21 .80 RPM
bodymap2_lung 23 .19 RPM
bodymap2_lymph_node 19 .66 RPM
bodymap2_ovary 35 .20 RPM
bodymap2_prostate 53 .57 RPM
bodymap2_skeletal_muscle 28 .41 RPM
bodymap2_testis 37 .39 RPM
bodymap2_thyroid 55 .06 RPM
bodymap2_white_blood_cells 44 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000021241 ortholog_one2one 2 retrogenes
retro_cjac_1415, retro_cjac_2384,
Dipodomys ordii ENSDORG00000014935 ortholog_one2one 1 retrogene
retro_dord_315,
Gorilla gorilla ENSGGOG00000000416 ortholog_one2one 1 retrogene
retro_ggor_2384,
Mus musculus ENSMUSG00000033918 ortholog_one2one 2 retrogenes
retro_mmus_1882, retro_mmus_3526,
Nomascus leucogenys ENSNLEG00000006072 ortholog_one2one 1 retrogene
retro_nleu_491,
Otolemur garnettii ENSOGAG00000006126 ortholog_one2one 1 retrogene
retro_ogar_648,
Pan troglodytes ENSPTRG00000015673 ortholog_one2one 1 retrogene
retro_ptro_2394,
Ictidomys tridecemlineatus ENSSTOG00000023222 ortholog_one2many 1 retrogene
retro_itri_380,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3526 85.85 55.41
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Download FASTA sequences of all ENSG00000175193 retrocopies