Parental gene:

ENSCJAG00000031826

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:25086164..25100927(+)


>ENSCJAG00000031826
CTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCCAACTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCG
AGTGGCTGGGACTACAGGCGTGTACCACCATGCCCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCTTGTTG
ACCAGGATGGTCTGGATCTCTTGACCTCAGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGGCCTTG
TGCGCACCACCACACCGGATAATTTTTGTATTTTTAGTAGAAACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACT
TCTGATCTCAGGTGATCCACCTGCCTTGGCTTCCCAAAGTACTGGGATCACAGGCGTGAGACACCGTGCCTGG

Library Parental gene expression (RPM)
SRP051959_colon 0 .51 RPM
SRP051959_heart 0 .35 RPM
SRP051959_kidney 0 .60 RPM
SRP051959_liver 0 .17 RPM
SRP051959_lung 0 .50 RPM
SRP051959_lymph_node 0 .46 RPM
SRP051959_skeletal_muscle 0 .28 RPM
SRP051959_spleen 0 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008153 within_species_paralog 10 retrogenes
retro_cjac_3418, retro_cjac_3455, retro_cjac_3485, retro_cjac_3512, retro_cjac_3661, retro_cjac_3690, retro_cjac_3761, retro_cjac_3768, retro_cjac_3792, retro_cjac_3794,
Callithrix jacchus ENSCJAG00000018676 within_species_paralog 1 retrogene
retro_cjac_3468,
Callithrix jacchus ENSCJAG00000031577 within_species_paralog 1 retrogene
retro_cjac_3697,
Callithrix jacchus ENSCJAG00000032572 within_species_paralog 2 retrogenes
retro_cjac_3443, retro_cjac_3779,
Callithrix jacchus ENSCJAG00000033038 within_species_paralog 1 retrogene
retro_cjac_3439,
Callithrix jacchus ENSCJAG00000035420 within_species_paralog 16 retrogenes
retro_cjac_3386, retro_cjac_3407, retro_cjac_3449, retro_cjac_3457, retro_cjac_3509, retro_cjac_3531, retro_cjac_3580, retro_cjac_3594, retro_cjac_3635, retro_cjac_3645, retro_cjac_3652, retro_cjac_3657, retro_cjac_3685, retro_cjac_3755, retro_cjac_3760, retro_cjac_3804,
Callithrix jacchus ENSCJAG00000035758 within_species_paralog 34 retrogenes
retro_cjac_286, retro_cjac_3341, retro_cjac_3380, retro_cjac_3385, retro_cjac_3409, retro_cjac_3426, retro_cjac_3427, retro_cjac_3444, retro_cjac_3448, retro_cjac_3450, retro_cjac_3494, retro_cjac_3510, retro_cjac_3533, retro_cjac_3534, retro_cjac_3552, retro_cjac_3562, retro_cjac_3579, retro_cjac_3629, retro_cjac_3632, retro_cjac_3650, retro_cjac_3673, retro_cjac_3683, retro_cjac_3695, retro_cjac_3702, retro_cjac_3716, retro_cjac_3738, retro_cjac_3748, retro_cjac_3749, retro_cjac_3752, retro_cjac_3758, retro_cjac_3769, retro_cjac_3773, retro_cjac_3785, retro_cjac_3797,
Callithrix jacchus ENSCJAG00000036542 within_species_paralog 13 retrogenes
retro_cjac_3360, retro_cjac_3431, retro_cjac_3440, retro_cjac_3459, retro_cjac_3538, retro_cjac_3558, retro_cjac_3576, retro_cjac_3615, retro_cjac_3636, retro_cjac_3665, retro_cjac_3691, retro_cjac_3721, retro_cjac_3803,
Callithrix jacchus ENSCJAG00000037288 within_species_paralog 16 retrogenes
retro_cjac_3393, retro_cjac_3447, retro_cjac_3475, retro_cjac_3499, retro_cjac_3518, retro_cjac_3519, retro_cjac_3535, retro_cjac_3561, retro_cjac_3603, retro_cjac_3662, retro_cjac_3667, retro_cjac_3703, retro_cjac_3710, retro_cjac_3715, retro_cjac_3727, retro_cjac_3793,
Callithrix jacchus ENSCJAG00000037961 within_species_paralog 5 retrogenes
retro_cjac_3573, retro_cjac_3711, retro_cjac_3723, retro_cjac_3766, retro_cjac_3778,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3352 69.40 100.00
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2. retro_cjac_3353 56.72 100.00
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3. retro_cjac_3357 65.48 61.83
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4. retro_cjac_3370 73.68 56.49
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5. retro_cjac_3379 57.29 71.76
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6. retro_cjac_3384 56.25 71.76
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7. retro_cjac_3388 68.66 100.00
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8. retro_cjac_3480 64.20 61.07
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9. retro_cjac_3493 55.56 99.24
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10. retro_cjac_3511 57.29 71.76
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11. retro_cjac_3513 62.50 96.18
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12. retro_cjac_3517 57.76 83.21
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13. retro_cjac_3557 56.00 56.49
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14. retro_cjac_3560 77.91 64.12
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15. retro_cjac_3567 66.29 66.41
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16. retro_cjac_3582 64.84 96.18
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17. retro_cjac_3605 68.57 51.15
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18. retro_cjac_3634 60.61 99.24
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19. retro_cjac_3643 55.91 67.18
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20. retro_cjac_3681 60.49 60.31
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21. retro_cjac_3729 62.88 100.00
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22. retro_cjac_3751 61.05 68.70
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23. retro_cjac_3759 60.31 99.24
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24. retro_cjac_3784 66.29 64.89
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Download FASTA sequences of all ENSCJAG00000031826 retrocopies