RetrogeneDB ID: | retro_cjac_3738 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | ACFV01197817.1:1215..1491(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000035758 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.13 % |
Parental protein coverage: | 92. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SFALVALECSGRISTHH--NLHLLGSRDSPASASRVAGITGMCYHTQLILMYILLETGFHHVGQVDLKLL |
SF.........R.S..H..NLHLL.S.DS..SA..VA.ITG...H...I....L.E..F.H.G....KLL | |
Retrocopy | SFVYLLIYFFNRVSLCHPGNLHLLDSNDSFVSAFLVAEITG-AHHARTIFIF-LVEMRFQHIG*AGFKLL |
Parental | SSSDLPTLASQSAGITGMSHHAQP |
.S.DL.TLASQSA.ITGM.HHAQP | |
Retrocopy | TSQDLSTLASQSAQITGMNHHAQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 0 .00 RPM |
SRP051959_heart | 0 .00 RPM | 0 .05 RPM |
SRP051959_kidney | 0 .00 RPM | 0 .00 RPM |
SRP051959_liver | 0 .00 RPM | 0 .00 RPM |
SRP051959_lung | 0 .00 RPM | 0 .07 RPM |
SRP051959_lymph_node | 0 .00 RPM | 0 .00 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
SRP051959_spleen | 0 .00 RPM | 0 .00 RPM |