Parental gene:

ENSCPOG00000001392

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_22:24883299..24899359(+)


>ENSCPOG00000001392
ATGGATGGAGGGGATGATGGCAATCTTGTTATCAAAAAGAGGTTTGTATCTGAGGCAGAATTAGATGAACGACGCAAAAG
GCGACAAGAAGAATGGGAGAAAGTTCGAAAACCCGAAGATCCCAAAGAATGTCCAGAGGAGGTTTATGACCCACGGTCTC
TCTATGAAAGGCTACAGGAACAGAAAGACAGGAAGCAGCAGGAGTATGAGGAGCAGTTCAAATTCAAAAACATGGTAAGA
GGCTTAGATGAAGATGAGACCAACTTCCTTGATGAGGTTTCTCGGCAGCAGGAGCTAATAGAAAAGCAACGAAGAGAAGA
AGAACTGAAGGAACTAAAGGAATACAGAATATCCTTTGTACTTAATCTCAATAAAGTTGGAATCTCTGCAGAAAACAAGA
AGGAAGTAGAGAAGAAACTGCCTGTGAAACCAATAGAAACCAAGAACAAGTTCTCCCAGGCGAAGCTGTTGGCAGGAGCT
GTGAAGCACAAGAGCTCAGAGAGTGGCAATAGTGTGAAAAGACTGAAACCAGACCCTGACCCAGATGACAAGAGTCAAGA
GGCCTCATCCTGTGTGTCTCTTGGAAGTACCTCCCTGAGTGGCCCATCCATTCACTGCCCCTCCGCTGCCGTCTGCATTG
GCATCCTCCCAGGTCTGGGCGCCTACTCCGGAAGCAGCGACTCTGAGTCCAGCTCAGACAGTGAAGGCACCATCAATGCC
ACAGGGAAGATTGTCTCCTCCATCTTCCGAACCAACACCTTCCTTGAGGCACCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 20 .71 RPM
SRP017611_kidney 25 .65 RPM
SRP017611_liver 10 .10 RPM
SRP040447_lung 14 .91 RPM
SRP040447_skeletal_muscle 10 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002242 ortholog_one2many 1 retrogene
retro_btau_1133,
Equus caballus ENSECAG00000009324 ortholog_one2many 1 retrogene
retro_ecab_710,
Echinops telfairi ENSETEG00000014379 ortholog_one2many 1 retrogene
retro_etel_930,
Homo sapiens ENSG00000172775 ortholog_one2many 1 retrogene
retro_hsap_2994,
Gorilla gorilla ENSGGOG00000003938 ortholog_one2many 1 retrogene
retro_ggor_2074,
Macaca mulatta ENSMMUG00000013492 ortholog_many2many 1 retrogene
retro_mmul_189,
Mus musculus ENSMUSG00000031774 ortholog_one2many 1 retrogene
retro_mmus_428,
Nomascus leucogenys ENSNLEG00000002716 ortholog_one2many 1 retrogene
retro_nleu_745,
Ochotona princeps ENSOPRG00000006909 ortholog_one2many 2 retrogenes
retro_opri_175, retro_opri_579,
Pongo abelii ENSPPYG00000007382 ortholog_one2many 1 retrogene
retro_pabe_2480,
Pan troglodytes ENSPTRG00000008148 ortholog_one2many 1 retrogene
retro_ptro_2025,
Tarsius syrichta ENSTSYG00000013300 ortholog_one2many 1 retrogene
retro_tsyr_884,
Tursiops truncatus ENSTTRG00000012791 ortholog_one2many 1 retrogene
retro_ttru_1884,
Vicugna pacos ENSVPAG00000005973 ortholog_one2many 1 retrogene
retro_vpac_321,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_122 93.02 100.00
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Download FASTA sequences of all ENSCPOG00000001392 retrocopies