Parental gene:

CLIC4, ENSCPOG00000004010

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_25:11029308..11082036(-)


>ENSCPOG00000004010
ATGGCGTTGTCGATGCCGCTGAACGGGCTGAAGGAGGAGGACAAAGAACCCCTCATCGAGCTCTTCGTCAAGGCTGGCAG
TGATGGGGAAAGCATAGGAAATTGTCCCTTCTCCCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTGTTTAGTG
TCACAACTGTGGACCTGAAAAGGAAGCCTGCGGACCTGCAGAACTTGGCTCCCGGGACCCACCCACCGTTTATAACTTTC
AACAATGAAGTCAAAACGGATGTCAATAAGATTGAGGAGTTTCTTGAAGAAGTCTTATGCCCTCCCAAATACTTAAAGCT
TTCACCAAAGCACCCAGAGTCAAATACTGCTGGAATGGACATTTTTGCCAAATTCTCTGCTTATATCAAGAACTCAAGGC
CAGAGGCTAATGAAGCCCTAGAGAGGGGTCTTTTGAAAACATTGCAGAAACTGGATGAGTATTTGAATTCTCCCTTACCT
GATGAAATTGATGAGAACAGTATGGAGGACATTAAATTTTCTACACGTAAATTTCTGGATGGCAATGAAATGACATTAGC
TGATTGCAACCTGTTGCCCAAACTGCACATTGTCAAGGTGGTAGCCAAGAAATACCGCAACTTCGATATTCCAAAAGGAA
TGACGGGCATCTGGAGATACTTAACTAATGCTTACAGTAGGGACGAGTTCACCAATACCTGTCCCAGTGATAAGGAGGTC
GAAATAGCATACAGTGATGTCGCCAAAAGACTTACCAAG

Library Parental gene expression (RPM)
SRP017611_brain 41 .18 RPM
SRP017611_kidney 104 .16 RPM
SRP017611_liver 34 .91 RPM
SRP040447_lung 90 .92 RPM
SRP040447_skeletal_muscle 20 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007591 ortholog_one2one 10 retrogenes
retro_chof_1284, retro_chof_1401, retro_chof_1446, retro_chof_1654, retro_chof_2177, retro_chof_2673, retro_chof_784, retro_chof_789, retro_chof_808, retro_chof_947,
Callithrix jacchus ENSCJAG00000020833 ortholog_one2one 2 retrogenes
retro_cjac_1713, retro_cjac_461,
Homo sapiens ENSG00000169504 ortholog_one2one 2 retrogenes
retro_hsap_4143, retro_hsap_4678,
Gorilla gorilla ENSGGOG00000005586 ortholog_one2one 2 retrogenes
retro_ggor_1579, retro_ggor_2783,
Macropus eugenii ENSMEUG00000008789 ortholog_one2one 1 retrogene
retro_meug_780,
Macaca mulatta ENSMMUG00000002416 ortholog_one2one 2 retrogenes
retro_mmul_1183, retro_mmul_2488,
Mus musculus ENSMUSG00000037242 ortholog_one2one 2 retrogenes
retro_mmus_2259, retro_mmus_945,
Nomascus leucogenys ENSNLEG00000008997 ortholog_one2one 3 retrogenes
retro_nleu_1457, retro_nleu_1785, retro_nleu_2168,
Otolemur garnettii ENSOGAG00000014620 ortholog_one2one 1 retrogene
retro_ogar_2672,
Pongo abelii ENSPPYG00000001715 ortholog_one2one 3 retrogenes
retro_pabe_219, retro_pabe_3466, retro_pabe_3632,
Pan troglodytes ENSPTRG00000000350 ortholog_one2one 3 retrogenes
retro_ptro_2816, retro_ptro_3107, retro_ptro_396,
Pteropus vampyrus ENSPVAG00000005838 ortholog_one2one 1 retrogene
retro_pvam_812,
Ictidomys tridecemlineatus ENSSTOG00000002184 ortholog_one2many 1 retrogene
retro_itri_52,
Tarsius syrichta ENSTSYG00000008978 ortholog_one2one 1 retrogene
retro_tsyr_252,
Vicugna pacos ENSVPAG00000007699 ortholog_one2one 1 retrogene
retro_vpac_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1490 76.10 98.81
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Download FASTA sequences of all ENSCPOG00000004010 retrocopies