Parental gene:

SMS, ENSCPOG00000006176

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_59:4459578..4483758(+)


>ENSCPOG00000006176
TTACCTTTTTCTCTCTGCTTTGCAGCTGATGGTGAGACCATTCTAAAAGGTCTACAGTCCATTTTCCAGGAACAGGGCAT
GGCGGAGTCAGTACATACCTGGCAGGACCATGGCTACCTAGCAACGTACACAAACAAAAATGGCAGCTTTGCCAATTTGA
GAATTTATCCACATGGATTGGTGTTATTCGATCTGCAAAGCTACGACAGTGACTCCCAGGGCAAAGAAGAAATTGATAAC
CTTTTGAACAAAGTAGAAGAGAGAATGAAAGAATTGAGTCAAGCCAGTATTGGGCGGGTGAAGCGTTTGCCAACCATAGT
TCGAGGAGGGGCCATCGACAGATACTGGCCTACAGCTGATGGGCGTCTGGTTGAGTATGACATAGATGAAGTAGTATATG
ACGAAGACTCACCTTATCAAAACATTAAAATTCTGCACTCGAAGCAATTTGGAAATATTCTCATCCTCAGTGGGGATGTT
AATTTGGCAGAGAGTGATTTGGCATATACCCGGGCCATCATGGGCAGTGGCAAAGAAGATTACACTGGCAAAGATGTACT
GATTCTGGGAGGTGGAGATGGAGGAATCTTATGTGAAATAGTCAAACTGAAACCAAAGATGGTCACTATGGTAGAGATTG
ACCAAATGGTGATTGATGCGTGTAAGAAATACATGCGGAACACATGTAGTGACGTCTTAGACAATCTCAAAGGAGACTGC
TATCAGGTTCTAATAGAAGACTGTATTCCAGTACTGAAGAGGTACGCCAAAGAAGGAAGAGAGTTTGATTATGTGATTAA
TGATTTGACTGCTGTTCCAATCTCCACGTCTCCAGAAGAAGATTCCACATGGGAGTTTCTCAGACTGATTCTTGACCTCT
CAATGAAAGTACTGAAACAGGATGGGAAATATTTTACACAGGGGAACTGTGTCAATTTGACAGAAGCCCTGTCGCTCTAT
GAAGAACAGCTTGGGCGCCTGTATTGTCCTGTGGAATTCTCGAAGGAGATTGTCTGTGTCCCTTCATACTTGGAATTATG
GGTATTTTACACTGTTTGGAAGAAAGCTAAGCCC

Library Parental gene expression (RPM)
SRP017611_brain 18 .35 RPM
SRP017611_kidney 23 .66 RPM
SRP017611_liver 21 .46 RPM
SRP040447_lung 26 .99 RPM
SRP040447_skeletal_muscle 18 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013284 possible_ortholog 3 retrogenes
retro_cfam_1076, retro_cfam_1995, retro_cfam_613,
Callithrix jacchus ENSCJAG00000033933 ortholog_one2many 1 retrogene
retro_cjac_518,
Echinops telfairi ENSETEG00000010098 ortholog_one2one 2 retrogenes
retro_etel_1066, retro_etel_1540,
Homo sapiens ENSG00000102172 ortholog_one2one 5 retrogenes
retro_hsap_243, retro_hsap_3168, retro_hsap_3193, retro_hsap_3611, retro_hsap_4826,
Gorilla gorilla ENSGGOG00000003123 ortholog_one2many 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Microcebus murinus ENSMICG00000000192 ortholog_one2one 3 retrogenes
retro_mmur_1421, retro_mmur_1484, retro_mmur_699,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Macaca mulatta ENSMMUG00000020392 ortholog_one2one 2 retrogenes
retro_mmul_2003, retro_mmul_2574,
Monodelphis domestica ENSMODG00000007897 ortholog_one2many 1 retrogene
retro_mdom_412,
Mus musculus ENSMUSG00000071708 ortholog_one2one 6 retrogenes
retro_mmus_2162, retro_mmus_2170, retro_mmus_2837, retro_mmus_3502, retro_mmus_3628, retro_mmus_994,
Nomascus leucogenys ENSNLEG00000009955 ortholog_one2one 4 retrogenes
retro_nleu_1664, retro_nleu_2200, retro_nleu_2208, retro_nleu_2755,
Oryctolagus cuniculus ENSOCUG00000006016 ortholog_one2one 2 retrogenes
retro_ocun_1458, retro_ocun_1918,
Pongo abelii ENSPPYG00000020182 ortholog_one2many 4 retrogenes
retro_pabe_2649, retro_pabe_2810, retro_pabe_3752, retro_pabe_38,
Rattus norvegicus ENSRNOG00000007688 ortholog_one2many 2 retrogenes
retro_rnor_1934, retro_rnor_938,
Tupaia belangeri ENSTBEG00000012109 ortholog_one2one 3 retrogenes
retro_tbel_1630, retro_tbel_1893, retro_tbel_3570,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_729 89.97 91.06
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_889 80.37 60.61
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000006176 retrocopies