Parental gene:

SMS, ENSOCUG00000006016

Aliases:None
Description:spermine synthase [Source:HGNC Symbol;Acc:11123]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:X:7698944..7745593(+)


>ENSOCUG00000006016
ATGCTCGGCGCCAAAGCTAATGGCGAGACCATTCTGAAAGGCCTCCAGTCAATTTTCCAGGAGCAAGGGATGGCAGAATC
GGTGCATACCTGGCAAGACCATGGGTATTTAGCCACCTACACCAACAAAAATGGCAGCTTCGCCAATTTGAGAATTTATC
CACACGGATTGGTGTTGCTGGACCTTCAGAGTTACGACAGTGATGCCCAGGGCAAGGAAGAGATCGACAGTCTTTTGAAC
AAAGTAGAAGAAAGAATGAAAGAATTGAGTCAGGACAGTACTGGGCGGGTGAAGCGATTGCCGCCCATTGTTCGAGGAGG
GGCCATTGACAGATACTGGCCCACCGCTGACGGGCGCCTGGTTGAGTATGACATAGATGAAGTGGTGTATGACGAAGACT
CGCCTTATCAGAACATTAAAATTCTGCACTCGAAACAGTTTGGAAACATTCTCATCCTCAGTGGGGATGTTAACTTGGCG
GAGAGTGATTTGGCGTATACCCGGGCCATCATGGGCAGTGGCAAAGAAGATTATACTGGCAAAGATGTGCTGATCCTGGG
AGGTGGAGATGGAGGCATACTATGTGAAATAGTCAAACTGAAACCAAAGATGGTCACTATGGTGGAGATTGACCAAATGG
TGATTGATGGATGCAAGAAATACATGAGAAAAACGTGTGGTGATGTTTTAGACAATCTTAACGGAGACTGCTATCAGGTT
CTCATAGAAGACTGCATTCCGGTACTGAAGAGGTACGCCAAAGAAGGGAGAGAGTTTGACTATGTGATTAATGACTTGAC
AGCTGTCCCAATCTCTACATCTCCAGAAGAAGATTCCACATGGGAGTTTCTCAGACTGATTCTTGATCTCTCTATGAAAG
TGTTGAAACAGGATGGGAAATACTTCACACAGGGCAACTGTGTCAATTTGACGGAAGCACTGTCACTCTACGAAGAACAG
CTCGGGCGCCTGTACTGTCCTGTGGAATTCTCAAAGGAGACGGTCTGCGTCCCTTCGTACTTGGAGTTGTGGGTATTTTA
TACTGTTTGGAAGAAAGCGAAACCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 81 .90 RPM
SRP017611_kidney 74 .50 RPM
SRP017611_liver 69 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018382 possible_ortholog 1 retrogene
retro_btau_1412,
Canis familiaris ENSCAFG00000013284 possible_ortholog 3 retrogenes
retro_cfam_1076, retro_cfam_1995, retro_cfam_613,
Callithrix jacchus ENSCJAG00000033933 possible_ortholog 1 retrogene
retro_cjac_518,
Cavia porcellus ENSCPOG00000006176 ortholog_one2one 2 retrogenes
retro_cpor_729, retro_cpor_889,
Echinops telfairi ENSETEG00000010098 ortholog_one2many 2 retrogenes
retro_etel_1066, retro_etel_1540,
Gorilla gorilla ENSGGOG00000003123 possible_ortholog 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Microcebus murinus ENSMICG00000000192 ortholog_one2one 3 retrogenes
retro_mmur_1421, retro_mmur_1484, retro_mmur_699,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Monodelphis domestica ENSMODG00000007897 ortholog_many2many 1 retrogene
retro_mdom_412,
Nomascus leucogenys ENSNLEG00000009955 ortholog_one2one 4 retrogenes
retro_nleu_1664, retro_nleu_2200, retro_nleu_2208, retro_nleu_2755,
Pongo abelii ENSPPYG00000020182 possible_ortholog 4 retrogenes
retro_pabe_2649, retro_pabe_2810, retro_pabe_3752, retro_pabe_38,
Pteropus vampyrus ENSPVAG00000016785 possible_ortholog 1 retrogene
retro_pvam_524,
Rattus norvegicus ENSRNOG00000007688 possible_ortholog 2 retrogenes
retro_rnor_1934, retro_rnor_938,
Tupaia belangeri ENSTBEG00000012109 ortholog_one2one 3 retrogenes
retro_tbel_1630, retro_tbel_1893, retro_tbel_3570,
Vicugna pacos ENSVPAG00000007543 possible_ortholog 1 retrogene
retro_vpac_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1458 71.28 78.31
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2. retro_ocun_1918 62.90 62.25
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Download FASTA sequences of all ENSOCUG00000006016 retrocopies