Parental gene:

SMS, ENSCJAG00000033933

Aliases:None
Description:spermine synthase [Source:HGNC Symbol;Acc:11123]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:20408651..20441873(+)


>ENSCJAG00000033933
TTGTCTTCTTACCATCATACCATTTTGCCTTCTTCCCCTTGTTCTCCAGCTGATGGTGAGACCATTCTAAAAGGCCTCCA
GTCCATTTTCCAGGAGCAGGGGATGGCGGAGTCAGTGCACACCTGGCAGGACCATGGCTACTTAGCAACCTACACAAACA
AGAATGGCAGCTTTGCCAATTTGAGAATTTACCCACATGGATTGGTGTTGCTGGACCTTCAGAGTTACGACGGTGACGCG
CAAGGCAAAGAAGAGATCGACAGTATTTTGAACAAAGTAGAAGAAAGAATGAAAGAATTGAGTCAGGATAGTACTGGACG
GGTGAAACGATTACCACCCATAGTTCGAGGAGGAGCCATTGACAGATATTGGCCCACCGCAGATGGTCGCCTGGTTGAAT
ATGACATAGATGAAGTGGTGTATGACGAAGACTCGCCTTATCAAAACATAAAAATTCTACACTCAAAACAGTTTGGAAAT
ATTCTCATCCTCAGTGGGGATGTTAATTTGGCAGAGAGTGATTTGGCGTATACCCGGGCCATCATGGGCAGCGGCAAAGA
AGATTACACTGGCAAAGATGTACTCATTCTGGGAGGCGGAGATGGGGGCATATTGTGTGAAATAGTCAAACTAAAACCAA
AGATGGTCACTATGCCTGTTTCGGACATTGACCAAATGGTGATTGATGGATGTAAGAAATATATGCGAAAAACGTGTGGT
GATGTCTTAGACAATCTTAAAGGAGACTGTTATCAGGTTCTAATAGAAGACTGTATTCCGGTACTGAAGAGGTACGCCAA
AGAAGGGAGAGAATTTGATTATGTGATTAATGATTTGACAGCTGTTCCAATATCCACGTCTCCAGAAGAAGATTCCACAT
GGGAGTTTCTCAGACTGATTCTTGACCTCTCAATGAAAGTATTGAAACAGGATGGGAAATATTTTACACAGGGGAACTGT
GTCAATGCGACGGAATCGGTGTCCATGTACGAAGAACACCTGGGGCGCTTGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .24 RPM
SRP051959_skeletal_muscle 7 .82 RPM
SRP051959_lymph_node 11 .14 RPM
SRP051959_lung 10 .44 RPM
SRP051959_liver 11 .85 RPM
SRP051959_kidney 18 .95 RPM
SRP051959_heart 21 .66 RPM
SRP051959_colon 11 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018382 possible_ortholog 1 retrogene
retro_btau_1412,
Canis familiaris ENSCAFG00000013284 possible_ortholog 3 retrogenes
retro_cfam_1076, retro_cfam_1995, retro_cfam_613,
Cavia porcellus ENSCPOG00000006176 ortholog_one2many 2 retrogenes
retro_cpor_729, retro_cpor_889,
Echinops telfairi ENSETEG00000010098 ortholog_one2many 2 retrogenes
retro_etel_1066, retro_etel_1540,
Gorilla gorilla ENSGGOG00000003123 ortholog_one2one 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Microcebus murinus ENSMICG00000000192 possible_ortholog 3 retrogenes
retro_mmur_1421, retro_mmur_1484, retro_mmur_699,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Monodelphis domestica ENSMODG00000007897 ortholog_many2many 1 retrogene
retro_mdom_412,
Mus musculus ENSMUSG00000071708 ortholog_one2many 6 retrogenes
retro_mmus_2162, retro_mmus_2170, retro_mmus_2837, retro_mmus_3502, retro_mmus_3628, retro_mmus_994,
Nomascus leucogenys ENSNLEG00000009955 ortholog_one2many 4 retrogenes
retro_nleu_1664, retro_nleu_2200, retro_nleu_2208, retro_nleu_2755,
Oryctolagus cuniculus ENSOCUG00000006016 possible_ortholog 2 retrogenes
retro_ocun_1458, retro_ocun_1918,
Pteropus vampyrus ENSPVAG00000016785 possible_ortholog 1 retrogene
retro_pvam_524,
Rattus norvegicus ENSRNOG00000007688 ortholog_many2many 2 retrogenes
retro_rnor_1934, retro_rnor_938,
Tupaia belangeri ENSTBEG00000012109 ortholog_one2many 3 retrogenes
retro_tbel_1630, retro_tbel_1893, retro_tbel_3570,
Vicugna pacos ENSVPAG00000007543 possible_ortholog 1 retrogene
retro_vpac_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_518 82.20 56.68
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Download FASTA sequences of all ENSCJAG00000033933 retrocopies