RetrogeneDB - Parental gene ENSCPOG00000002632 details

                            
>ENSCPOG00000002632
ATGGTCAACCCCACCGTGTTCTTCGACATTGCCGCTGACGGCGAGCCCTTGGGCCGCGTCTCTTTCGAGCTGTATGCAGA

CAAAGTGCCAAAGACTGCAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCT

TTCACAGAATTATTCCAGGATTTATGTGCCAGGGTGGTGACTTCACACGCCACAATGGTACGGGCGGCAAGTCCATCTAT

GGGGAGAAATTCGATGATGAAAACTTCATCCTGAAGCACACAGGTCCTGGCATTTTGTCCATGGCAAATGCTGGGCCAAA

CACAAATGGTTCCCAGTTTTTCATCTGCACTGCCAAGACCGAATGGTTGGACGGCAAGCACGTGGTGTTCGGAAAGGTGA

AGGAGGGCATGAACACTGTGGAGGCTATGGAGCGTTTTGGGTCCAGGAACGGCAAGACCAGCAAGAAGATCACCATCACT

GACTGCGGGCAGCTCTAA

Library	Parental gene expression (RPM)
SRP017611_brain	464 .33 RPM
SRP017611_kidney	448 .59 RPM
SRP017611_liver	277 .27 RPM
SRP040447_lung	585 .22 RPM
SRP040447_skeletal_muscle	191 .42 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000012003	possible_ortholog	12 retrogenes	retro_btau_1005, retro_btau_1448, retro_btau_155, retro_btau_1696, retro_btau_1806, retro_btau_272, retro_btau_334, retro_btau_335, retro_btau_345, retro_btau_414, retro_btau_751, retro_btau_934,
Callithrix jacchus	ENSCJAG00000011969	ortholog_one2many	54 retrogenes	retro_cjac_1065, retro_cjac_1080, retro_cjac_1083, retro_cjac_1092, retro_cjac_1097, retro_cjac_11, retro_cjac_1193, retro_cjac_1213, retro_cjac_1310, retro_cjac_1326, retro_cjac_1347, retro_cjac_1451, retro_cjac_147, retro_cjac_1678, retro_cjac_1710, retro_cjac_1760, retro_cjac_1782, retro_cjac_1982, retro_cjac_1989, retro_cjac_2043, retro_cjac_2060, retro_cjac_2062, retro_cjac_2118, retro_cjac_2286, retro_cjac_2327, retro_cjac_2376, retro_cjac_2425, retro_cjac_2426, retro_cjac_2479, retro_cjac_2540, retro_cjac_2688, retro_cjac_2863, retro_cjac_2881, retro_cjac_2977, retro_cjac_3073, retro_cjac_3077, retro_cjac_3101, retro_cjac_3196, retro_cjac_384, retro_cjac_4202, retro_cjac_4203, retro_cjac_501, retro_cjac_646, retro_cjac_649, retro_cjac_695, retro_cjac_704, retro_cjac_710, retro_cjac_714, retro_cjac_717, retro_cjac_755, retro_cjac_827, retro_cjac_834, retro_cjac_871, retro_cjac_971,
Cavia porcellus	ENSCPOG00000007365	other_paralog	1 retrogene	retro_cpor_560,
Echinops telfairi	ENSETEG00000002186	possible_ortholog	21 retrogenes	retro_etel_115, retro_etel_1188, retro_etel_1292, retro_etel_1322, retro_etel_1670, retro_etel_1827, retro_etel_1875, retro_etel_1886, retro_etel_208, retro_etel_25, retro_etel_288, retro_etel_371, retro_etel_430, retro_etel_447, retro_etel_485, retro_etel_537, retro_etel_551, retro_etel_568, retro_etel_595, retro_etel_937, retro_etel_998,
Gorilla gorilla	ENSGGOG00000026298	possible_ortholog	4 retrogenes	retro_ggor_138, retro_ggor_15, retro_ggor_165, retro_ggor_28,
Loxodonta africana	ENSLAFG00000011345	ortholog_one2one	1 retrogene	retro_lafr_483,
Macaca mulatta	ENSMMUG00000016638	possible_ortholog	10 retrogenes	retro_mmul_1, retro_mmul_13, retro_mmul_132, retro_mmul_141, retro_mmul_161, retro_mmul_195, retro_mmul_245, retro_mmul_5, retro_mmul_56, retro_mmul_8,
Monodelphis domestica	ENSMODG00000016089	possible_ortholog	9 retrogenes	retro_mdom_1373, retro_mdom_1524, retro_mdom_1856, retro_mdom_1884, retro_mdom_215, retro_mdom_272, retro_mdom_29, retro_mdom_730, retro_mdom_85,
Mus musculus	ENSMUSG00000071866	possible_ortholog	2 retrogenes	retro_mmus_242, retro_mmus_285,
Oryctolagus cuniculus	ENSOCUG00000016662	possible_ortholog	3 retrogenes	retro_ocun_113, retro_ocun_1406, retro_ocun_237,
Otolemur garnettii	ENSOGAG00000027997	possible_ortholog	31 retrogenes	retro_ogar_1090, retro_ogar_1201, retro_ogar_1305, retro_ogar_1329, retro_ogar_1336, retro_ogar_1562, retro_ogar_1634, retro_ogar_1741, retro_ogar_1889, retro_ogar_1893, retro_ogar_1920, retro_ogar_1973, retro_ogar_1974, retro_ogar_1999, retro_ogar_21, retro_ogar_2246, retro_ogar_2265, retro_ogar_2397, retro_ogar_2401, retro_ogar_2440, retro_ogar_2484, retro_ogar_2794, retro_ogar_2907, retro_ogar_2924, retro_ogar_2938, retro_ogar_2948, retro_ogar_3072, retro_ogar_3187, retro_ogar_3210, retro_ogar_357, retro_ogar_743,
Pongo abelii	ENSPPYG00000017586	possible_ortholog	12 retrogenes	retro_pabe_1065, retro_pabe_1330, retro_pabe_186, retro_pabe_221, retro_pabe_2267, retro_pabe_2469, retro_pabe_2633, retro_pabe_2730, retro_pabe_2812, retro_pabe_3474, retro_pabe_631, retro_pabe_995,
Pongo abelii	ENSPPYG00000017587	possible_ortholog	4 retrogenes	retro_pabe_1118, retro_pabe_2202, retro_pabe_3311, retro_pabe_3602,
Rattus norvegicus	ENSRNOG00000006423	possible_ortholog	2 retrogenes	retro_rnor_360, retro_rnor_387,
Ictidomys tridecemlineatus	ENSSTOG00000010215	ortholog_one2one	10 retrogenes	retro_itri_1073, retro_itri_1576, retro_itri_1683, retro_itri_1897, retro_itri_499, retro_itri_667, retro_itri_7, retro_itri_731, retro_itri_802, retro_itri_978,
Tarsius syrichta	ENSTSYG00000008973	possible_ortholog	23 retrogenes	retro_tsyr_1106, retro_tsyr_1266, retro_tsyr_1277, retro_tsyr_1530, retro_tsyr_1643, retro_tsyr_1816, retro_tsyr_1909, retro_tsyr_2040, retro_tsyr_2072, retro_tsyr_2097, retro_tsyr_388, retro_tsyr_400, retro_tsyr_408, retro_tsyr_430, retro_tsyr_459, retro_tsyr_478, retro_tsyr_481, retro_tsyr_507, retro_tsyr_641, retro_tsyr_705, retro_tsyr_760, retro_tsyr_847, retro_tsyr_924,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cpor_165	77.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cpor_192	62.96	64.85	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cpor_251	70.93	50.91	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cpor_372	52.86	65.38	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cpor_642	56.21	90.91	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cpor_902	67.80	54.81	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cpor_960	82.22	81.21	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cpor_1152	60.99	83.64	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cpor_1284	62.32	65.38	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cpor_1395	70.45	78.18	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_cpor_1493	50.96	60.61	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCPOG00000002632 retrocopies

Parental gene:	PPIA, ENSCPOG00000002632
Aliases:	None
Description:	Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H0UZ02]
Organism:	*Guinea Pig (Cavia porcellus)*
Coordinates:	scaffold_66:2405882..2408767(-)

Parental gene:

PPIA, ENSCPOG00000002632