Parental gene:

HSD17B10, ENSCPOG00000009594

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_139:1864036..1866183(+)


>ENSCPOG00000009594
ATGGCTGCGGCGTGTCGGAGTGTGAAGGGCCTAGTTGCAGTAATAACTGGAGGAGCCTCAGGCCTTGGCTTGGCTACAGC
GGAGCGACTGGTGAGGCAAGGGGCCACTGCTGTGCTTCTGGACTTGCCCAACTCTGATGGAGAGGCCCAGGCCAAGAAGT
TAGGAAAGAGCTGTGTGTTTGTCCCAGCTGATGTAACGTCTGAGAAGGATGTGCAGACAGCCCTGACTCTCGCAAAGGAA
AATTTTGGCCGTGTGGATGTGGCCGTCAACTGTGCAGGTATTGCAATTGCCAGTAAAACATACAACTTAAAGAAGAAGCA
GGCTCACAACTTGGAGGACTTTCAGCGAGTACTCAATGTGAATCTCTTAGGCACCTTTAATGTGATCCGCCTGGTTGCTG
GTGAGATGGGCCAGAATGAACCAGATGAGGGAGGCCAACGTGGGATTATCATCAACACTGCCAGTGTGGCTGCCTTTGAG
GGCCAGGTTGGACAAGCTGCATACTCTGCATCTAAGGGAGGCATAGTGGGCATGACACTGCCCATTGCTCGGGATCTGGC
TCCCATAGGCATCCGGGTGATGACCATTGCTCCAGGCCTGTTTGGCACCCCACTGCTGACCAGCCTCCCAGAAAAGGTAC
GCAACTTCTTGGCCAGCCAGGTACCATTCCCCACCCGACTTGGAGACCCTGCTGAGTATGCTCATCTGGTACAGACCATA
ATCGAGAACCCATTCCTCAATGGAGAGGTCATCCGGCTTGATGGGGCCATCCGCATGCAGCCTTGA

Library Parental gene expression (RPM)
SRP017611_brain 30 .31 RPM
SRP017611_kidney 112 .22 RPM
SRP017611_liver 164 .01 RPM
SRP040447_lung 41 .36 RPM
SRP040447_skeletal_muscle 54 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005036 ortholog_one2one 1 retrogene
retro_amel_371,
Canis familiaris ENSCAFG00000016277 ortholog_one2one 1 retrogene
retro_cfam_545,
Choloepus hoffmanni ENSCHOG00000000939 ortholog_one2many 1 retrogene
retro_chof_582,
Dipodomys ordii ENSDORG00000004051 ortholog_one2one 1 retrogene
retro_dord_532,
Erinaceus europaeus ENSEEUG00000005080 ortholog_one2one 1 retrogene
retro_eeur_379,
Felis catus ENSFCAG00000013899 ortholog_one2one 1 retrogene
retro_fcat_1827,
Macropus eugenii ENSMEUG00000008565 ortholog_one2one 1 retrogene
retro_meug_2184,
Myotis lucifugus ENSMLUG00000000175 ortholog_one2many 1 retrogene
retro_mluc_4,
Otolemur garnettii ENSOGAG00000002951 ortholog_one2one 1 retrogene
retro_ogar_1823,
Tarsius syrichta ENSTSYG00000005340 ortholog_one2one 3 retrogenes
retro_tsyr_1000, retro_tsyr_1542, retro_tsyr_2078,
Xenopus tropicalis ENSXETG00000007721 ortholog_one2one 1 retrogene
retro_xtro_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_535 79.01 61.30
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Download FASTA sequences of all ENSCPOG00000009594 retrocopies