RetrogeneDB ID: retro_mluc_4

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429848:3585834..3586620(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003762
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000175
• Aliases: None
• Description: None

Sequence

>retro_mluc_4
ATGGCTGCGGTGAGTCGGGGCGTGAAGGGCCTGGTGGCCGTCATCACCGGGGGCGCCTCGGGCCTCGGTCTGGCCACGGC
GGAGCGGCTGGTGGGACAGGGGGCCAGTGCTGTGCTGCTGGACATGCCCGGCTCCGACGGGGAGGAGCAGGCCCGGCGGC
TGGGGAAGAGCTGCACCTTCGCCCCAACCGACGTGACCTCGGAGGAGGACGTGCGCGCAGCTCTGGCTTTAGCGAAAGGA
AAGTTTGGCCGCGTGGACGTGGCCGTCAATTGTGTAGGCATCGCGGTGGCCCTCCAGACCTACGACCTGAAGAGCCGGCA
GGCCCACCCCTTGGAGGACTTCCAACGAGTGATCAACGTGAATCTCATCGGCACCTTCAACGTGATCCGCCTCGTGGCCT
GGGAGATGGGCCTGAACGCACCGGACCCGGGAGGCCAGCGAGGGGTCATCATCAACACGGCCAGCGTGGCCGCCTTCGAG
GGCCAGGTGGGCCAGGCGGCATACTCCGCTTCCAAGGCGGGCGTGGCGGGCATGACACTGCCCATTGCCCGGGACCTGGC
GCCCCTGGGCATCCGCGTGATAACCATCGCTCCCGGCCTGTTCGGCACCCCGCTGATGACCACCCTCCCCGAGAAAATGT
GCAACTACCTGGCCAGCCAGGTGCCCTTCCCCCGCCGCCTGGGCCACCCTGCTGAGTACGCGCACCTGGTACAGTGCATC
ATCGAGAACCGGTTCATCAACGGAGAGGTCATCCGGCTGGATGGGGCCATCCGCATGCAGCCTTGA

Alignment

ORF - retro_mluc_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.21 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAACRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDMPSSNGEEQAKKLGKSCAFAPTDVTSEKD
          MAA..R.VKGLVAVITGGASGLGLATAERLVGQGASAVLLDMP.S.GEEQA..LGKSC.FAPTDVTSE.D
Retrocopy MAAVSRGVKGLVAVITGGASGLGLATAERLVGQGASAVLLDMPGSDGEEQARRLGKSCTFAPTDVTSEED

Parental  VQAALALAKEKFGRVDVAVNCAGIAVALKTYNLKRNQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNE
          V.AALALAK.KFGRVDVAVNC.GIAVAL.TY.LK..QAH.LEDFQRVINVNLIGTFNVIRLVA.EMG.N.
Retrocopy VRAALALAKGKFGRVDVAVNCVGIAVALQTYDLKSRQAHPLEDFQRVINVNLIGTFNVIRLVAWEMGLNA

Parental  PDQEGQRGIIINTASVAAYEGQVGQAAYSASKGGIVGMTLPIARDLAPMGIRVITIAPGLFGTPLLTSLP
          PD..GQRG.IINTASVAA.EGQVGQAAYSASK.G..GMTLPIARDLAP.GIRVITIAPGLFGTPL.T.LP
Retrocopy PDPGGQRGVIINTASVAAFEGQVGQAAYSASKAGVAGMTLPIARDLAPLGIRVITIAPGLFGTPLMTTLP

Parental  EKVRNFLASQVPFPSRLGHPAEYAHLVQSIIENPFINGEVIRLDGAIRMQP
          EK..N.LASQVPFP.RLGHPAEYAHLVQ.IIEN.FINGEVIRLDGAIRMQP
Retrocopy EKMCNYLASQVPFPRRLGHPAEYAHLVQCIIENRFINGEVIRLDGAIRMQP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_4 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005036	1 retrocopy	retro_amel_371,
Canis familiaris	ENSCAFG00000016277	1 retrocopy	retro_cfam_545,
Choloepus hoffmanni	ENSCHOG00000000939	1 retrocopy	retro_chof_582,
Cavia porcellus	ENSCPOG00000009594	1 retrocopy	retro_cpor_535,
Dipodomys ordii	ENSDORG00000004051	1 retrocopy	retro_dord_532,
Erinaceus europaeus	ENSEEUG00000005080	1 retrocopy	retro_eeur_379,
Felis catus	ENSFCAG00000013899	1 retrocopy	retro_fcat_1827,
Macropus eugenii	ENSMEUG00000008565	1 retrocopy	retro_meug_2184,
Myotis lucifugus	ENSMLUG00000000175	1 retrocopy	retro_mluc_4 ,
Otolemur garnettii	ENSOGAG00000002951	1 retrocopy	retro_ogar_1823,
Tarsius syrichta	ENSTSYG00000005340	3 retrocopies	retro_tsyr_1000, retro_tsyr_1542, retro_tsyr_2078,
Xenopus tropicalis	ENSXETG00000007721	1 retrocopy	retro_xtro_39,