Parental gene:

HSD17B10, ENSEEUG00000005080

Aliases:None
Description:hydroxysteroid (17-beta) dehydrogenase 10 [Source:HGNC Symbol;Acc:4800]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_719:182829..185581(-)


>ENSEEUG00000005080
ATGGCCGCCGCGTGTAAAAGTGTGAAGGGCCTGGTCGCTATAATAACAGGAGGAGCCTCAGGTCTAGGTCTGGCCACCGC
AGAGCGACTGGTGGGGCAAGGAGCCACTGCTGTACTTCTGGACCTGCCTAACTCAGATGGGGAGGCCCAGGCCAAGAAGT
TAGGGAAGAATTGTGCCTTCGCCCCAACTGATGTGACTTCAGAGAAAGAAGTGCAAGCAGCCCTCAATTTAGCAAAAACA
AAGTTTGGCCGTGTGGATGTGGCAATCAACTGTGCTGGCATTGCAGTGGCCATCAGGACGTACAACTCAAAGAGGAACCA
GGCTCACACCTTGGAGGACTTCCAGCGAGTTCTCAATGTGAATCTTTTAGGTACCTTCAACGTGATCCGCCTGGCGGCTG
GTGAGATGGGCCAAAATGAACCAGACCAAGGAGGCCAACGTGGGGTCATCATCAATACTGCTAGTGTGGCTGCCTTTGAG
GGCCAGGTTGGACAAGCTGCATACTCTGCTTCCAAAGGGGGCATAGTGGGCATGACACTGCCTATTGCTCGAGATCTGGC
TCCCATGGGCATCCGAGTAATGACCATTGCTCCAGGTCTATTTGGCACCCCACTGCTAACCACTCTCCCAGAGAAAGTAC
GAAACTTCCTGGCCAGCCAAGTGCCCTTCCCTAGCCGACTGGGTGACCCTTCTGAATATGCTCATCTGGTACAGGCCATC
ATTGAGAACCCATTCATCAATGGAGAGGTCATCCGGCTAGATGGGGCCATTCGCCTGCAACCTTGA

Library Parental gene expression (RPM)
SRP017611_liver 189 .88 RPM
SRP017611_kidney 138 .22 RPM
SRP017611_brain 26 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005036 ortholog_one2one 1 retrogene
retro_amel_371,
Canis familiaris ENSCAFG00000016277 ortholog_one2one 1 retrogene
retro_cfam_545,
Choloepus hoffmanni ENSCHOG00000000939 ortholog_one2many 1 retrogene
retro_chof_582,
Cavia porcellus ENSCPOG00000009594 ortholog_one2one 1 retrogene
retro_cpor_535,
Dipodomys ordii ENSDORG00000004051 ortholog_one2one 1 retrogene
retro_dord_532,
Felis catus ENSFCAG00000013899 ortholog_one2one 1 retrogene
retro_fcat_1827,
Macropus eugenii ENSMEUG00000008565 ortholog_one2one 1 retrogene
retro_meug_2184,
Myotis lucifugus ENSMLUG00000000175 ortholog_one2many 1 retrogene
retro_mluc_4,
Otolemur garnettii ENSOGAG00000002951 ortholog_one2one 1 retrogene
retro_ogar_1823,
Tarsius syrichta ENSTSYG00000005340 ortholog_one2one 3 retrogenes
retro_tsyr_1000, retro_tsyr_1542, retro_tsyr_2078,
Xenopus tropicalis ENSXETG00000007721 ortholog_one2one 1 retrogene
retro_xtro_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_379 80.65 59.39
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Download FASTA sequences of all ENSEEUG00000005080 retrocopies