Parental gene:

hsd17b10, ENSXETG00000007721

Aliases:None
Description:hydroxysteroid (17-beta) dehydrogenase 10 [Source:Jamboree;Acc:XB-GENE-986902]
Organism:Xenopus (Xenopus tropicalis)
Coordinates:GL172790.1:1487319..1492565(-)


>ENSXETG00000007721
TTACTGGCCAAGTGCTGCAAAAAACAGGGTTTGGTGGGCATCGTCACAGGAGGAGCATCGGGCCTTGGCCGGGCTACTGT
AGAACGTTTGGTGCGCCAAGGAGCCAGCGCTGTCATCTTGGATTTGCCCAAATCAGAAGGGAAGACTGTTGCTGAGTCTT
TAGGCGAGAAGTGTGCTTTCTCTCCCACTGATGTGACTTCTGAGGCGGATGTGAAAAATGCTTTGGAACTGGCACGTACA
AAGTTCGGTCGGGTGGACGTTGTCGTGAACTGTGCTGGAATAGCTGTTGCTGCAAAAACATACAACCTAAACAAACAGCT
GCCCCATAGTTTAGAGGACTTCCAGAGAGTAATCAATGTGAATATCGCTGGCACTTTTAACGTTATCCGCCTGGCAGCTG
GCGAGATGGGGAAGAATGACCCTGATGAGGATGGACACAGAGGGGTGATTGTTAATACAGCCAGTGTTGCTGCTTTTGAT
GGACAGGTGGGGCAAGCGGCCTACTCTGCCTCCAAAGGAGGAATTGTTGGTATGACTCTGCCCATTGCTCGAGATCTGGC
ACCCATGGGGATTAGAGTCGTAACTATTGCTCCAGGATTATTTGCAACTCCTCTGCTTGTTGGACTTCCTGAAAAGGTGA
GAAATTTCCTGGCCAAGCAAGTGCCCTTCCCAAGCAGGCTGGGTGACCCTGGGGAGTATGCGCACCTTGTGCAGTCCATT
GTGGAGAATCCAATGTTAAATGGAGAGGTTATTCGACTTGATGGGGCCCTCCGCATGCAGCCTTAA

Library Parental gene expression (RPM)
SRP007412_brain 50 .20 RPM
SRP007412_skeletal_muscle 31 .07 RPM
SRP007412_heart 114 .57 RPM
SRP007412_kidney 114 .57 RPM
SRP007412_liver 56 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005036 ortholog_one2one 1 retrogene
retro_amel_371,
Canis familiaris ENSCAFG00000016277 ortholog_one2one 1 retrogene
retro_cfam_545,
Choloepus hoffmanni ENSCHOG00000000939 ortholog_one2many 1 retrogene
retro_chof_582,
Cavia porcellus ENSCPOG00000009594 ortholog_one2one 1 retrogene
retro_cpor_535,
Dipodomys ordii ENSDORG00000004051 ortholog_one2one 1 retrogene
retro_dord_532,
Erinaceus europaeus ENSEEUG00000005080 ortholog_one2one 1 retrogene
retro_eeur_379,
Felis catus ENSFCAG00000013899 ortholog_one2one 1 retrogene
retro_fcat_1827,
Macropus eugenii ENSMEUG00000008565 ortholog_one2one 1 retrogene
retro_meug_2184,
Myotis lucifugus ENSMLUG00000000175 ortholog_one2many 1 retrogene
retro_mluc_4,
Otolemur garnettii ENSOGAG00000002951 ortholog_one2one 1 retrogene
retro_ogar_1823,
Tarsius syrichta ENSTSYG00000005340 ortholog_one2one 3 retrogenes
retro_tsyr_1000, retro_tsyr_1542, retro_tsyr_2078,
Xenopus tropicalis ENSXETG00000021320 within_species_paralog 2 retrogenes
retro_xtro_35, retro_xtro_37,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_xtro_39 59.72 82.76
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Download FASTA sequences of all ENSXETG00000007721 retrocopies