Parental gene:

ENSCPOG00000011748

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_11:29883704..29886732(-)


>ENSCPOG00000011748
ATGGTGGACGTGATGGAGTTACCCAAGTCGCGCATCAATGCCAGCATGTTATCTCAGTTCATTGACCGGCCAGTCTGCTT
CGTAGGAAGACTGGAAAAGATTCATCCCACTGGAAAAATGTTTATCCTTTCCGATGGAGAAGGAAAAAATGGAACCGTTG
AATTAATGGAGCCACTTGATGAAGAAATATCTGGAATCGTGGAAGTAGTTGGACGAGTAACAGCCAAAGCAACCATCATG
TGTTCCTCTTACGTCCAGTTTAGAGAAGATAACAATCCTTTTGATCTCGGACTATATAATGAAGCAGTGAAAATTATTCA
TGAGTTCCCTCAGTTTTTTCCTTTCAGAGTG

Library Parental gene expression (RPM)
SRP017611_brain 4 .43 RPM
SRP017611_kidney 5 .97 RPM
SRP017611_liver 8 .62 RPM
SRP040447_lung 9 .21 RPM
SRP040447_skeletal_muscle 4 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016401 ortholog_one2many 1 retrogene
retro_amel_1031,
Callithrix jacchus ENSCJAG00000000705 ortholog_one2many 1 retrogene
retro_cjac_3111,
Dasypus novemcinctus ENSDNOG00000011718 ortholog_one2many 3 retrogenes
retro_dnov_1044, retro_dnov_1824, retro_dnov_2045,
Equus caballus ENSECAG00000007680 ortholog_one2many 2 retrogenes
retro_ecab_212, retro_ecab_819,
Felis catus ENSFCAG00000025369 ortholog_one2many 1 retrogene
retro_fcat_1287,
Homo sapiens ENSG00000106399 ortholog_one2many 2 retrogenes
retro_hsap_2179, retro_hsap_3473,
Gorilla gorilla ENSGGOG00000022464 ortholog_one2many 2 retrogenes
retro_ggor_1727, retro_ggor_2342,
Microcebus murinus ENSMICG00000000741 ortholog_one2many 1 retrogene
retro_mmur_934,
Myotis lucifugus ENSMLUG00000007421 ortholog_one2many 1 retrogene
retro_mluc_852,
Macaca mulatta ENSMMUG00000000854 ortholog_many2many 2 retrogenes
retro_mmul_131, retro_mmul_909,
Mus musculus ENSMUSG00000012483 ortholog_one2many 1 retrogene
retro_mmus_413,
Nomascus leucogenys ENSNLEG00000016151 ortholog_one2many 2 retrogenes
retro_nleu_308, retro_nleu_340,
Oryctolagus cuniculus ENSOCUG00000000467 ortholog_one2many 1 retrogene
retro_ocun_1097,
Otolemur garnettii ENSOGAG00000001018 ortholog_many2many 1 retrogene
retro_ogar_113,
Pongo abelii ENSPPYG00000017787 ortholog_one2many 2 retrogenes
retro_pabe_2062, retro_pabe_2868,
Pan troglodytes ENSPTRG00000018927 ortholog_one2many 1 retrogene
retro_ptro_2354,
Rattus norvegicus ENSRNOG00000008309 ortholog_many2many 2 retrogenes
retro_rnor_2803, retro_rnor_53,
Sus scrofa ENSSSCG00000023886 ortholog_one2many 1 retrogene
retro_sscr_297,
Tupaia belangeri ENSTBEG00000010930 ortholog_many2many 6 retrogenes
retro_tbel_1347, retro_tbel_1876, retro_tbel_2736, retro_tbel_4029, retro_tbel_87, retro_tbel_917,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_855 66.67 64.10
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2. retro_cpor_998 78.81 100.00
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Download FASTA sequences of all ENSCPOG00000011748 retrocopies