Parental gene:

TBCA, ENSCPOG00000012187

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_83:663914..739015(-)


>ENSCPOG00000012187
GGCGCCATGGCCGATCCTCGCGTGAGGCAGATTAAGATCAAGACCGGCGTGGTGAAGCGATTGGTCAAAGAAAAAGCGAT
GTATGAAAAAGAAGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAAAGCTGAGGATGGTGAAAATTATGCCATAAAAA
AGCAGGCAGAGATCCTGCAGGAGTCCCGGATGATGATCCCTGATTGCCAACGCAGGTTAGAGGCAGCATACACTGATCTT
CAGCAAATATTAGAAAGTGAAAAAGATTTGGAAGAAGCTGAGGAATATAAAGAAGCACGTGTAGTTTTGGATTCAGTGAA
ATTAGAAGCC

Library Parental gene expression (RPM)
SRP017611_brain 10 .53 RPM
SRP017611_kidney 33 .50 RPM
SRP017611_liver 25 .55 RPM
SRP040447_lung 17 .86 RPM
SRP040447_skeletal_muscle 16 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014223 ortholog_one2many 4 retrogenes
retro_acar_11, retro_acar_130, retro_acar_142, retro_acar_195,
Callithrix jacchus ENSCJAG00000019848 possible_ortholog 4 retrogenes
retro_cjac_114, retro_cjac_2160, retro_cjac_2173, retro_cjac_2974,
Echinops telfairi ENSETEG00000016572 ortholog_one2one 1 retrogene
retro_etel_93,
Homo sapiens ENSG00000171530 ortholog_one2one 3 retrogenes
retro_hsap_3065, retro_hsap_346, retro_hsap_4667,
Macaca mulatta ENSMMUG00000011853 ortholog_one2many 1 retrogene
retro_mmul_229,
Mus musculus ENSMUSG00000042043 ortholog_one2one 3 retrogenes
retro_mmus_1486, retro_mmus_2839, retro_mmus_2970,
Otolemur garnettii ENSOGAG00000010198 ortholog_one2one 1 retrogene
retro_ogar_3193,
Ochotona princeps ENSOPRG00000002460 ortholog_one2one 4 retrogenes
retro_opri_550, retro_opri_727, retro_opri_879, retro_opri_91,
Pongo abelii ENSPPYG00000015579 ortholog_one2one 2 retrogenes
retro_pabe_2540, retro_pabe_350,
Pan troglodytes ENSPTRG00000017013 ortholog_one2one 2 retrogenes
retro_ptro_2067, retro_ptro_274,
Rattus norvegicus ENSRNOG00000048342 ortholog_one2many 1 retrogene
retro_rnor_140,
Sorex araneus ENSSARG00000009943 ortholog_one2one 1 retrogene
retro_sara_699,
Ictidomys tridecemlineatus ENSSTOG00000009840 ortholog_one2one 1 retrogene
retro_itri_246,
Tupaia belangeri ENSTBEG00000006034 ortholog_one2one 6 retrogenes
retro_tbel_1073, retro_tbel_113, retro_tbel_1286, retro_tbel_2336, retro_tbel_2905, retro_tbel_756,
Tarsius syrichta ENSTSYG00000000514 ortholog_one2one 1 retrogene
retro_tsyr_1038,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_930 83.33 70.91
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Download FASTA sequences of all ENSCPOG00000012187 retrocopies