RetrogeneDB ID: | retro_acar_130 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | 4:45524203..45524512(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSACAG00000014223 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_acar_130
CCTCGCGTCAGGCAGATCAAAATCAAAACGGGCGTAGTGAAACATTTGGCAAAGAAAAGGGTTATGTATGAAAAGGAAGC
AAAACAGCAGGAAGAAAAGATTGAAAAAATAAAAACTGAAGATCCTGATGACTATTCAATAAAGATGGAAATCTTGCAGG
AATCTTGAATGATGATTCCAGATTGCCAACGCATATTAGAAGCTGCACAGGATGATCTTGTTCAGCTATTAGAAAATGAA
AAGGAATTGGAAGACACTGACAAATATAAAGATGCATTCTGAGTACTGGAGTCAATAAAGTTAGATGCC
ORF - retro_acar_130 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.67 % |
| Parental protein coverage: | 97.22 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PRVRQIKIKTGVVKRLAKERVMYEKEAKQQEEKIEKMKTEDPDDYSIKKQIEVLQESRMMIPDCQRRLEA |
| PRVRQIKIKTGVVK.LAK.RVMYEKEAKQQEEKIEK.KTEDPDDYSIK...E.LQES.MMIPDCQR.LEA | |
| Retrocopy | PRVRQIKIKTGVVKHLAKKRVMYEKEAKQQEEKIEKIKTEDPDDYSIK--MEILQES*MMIPDCQRILEA |
| Parental | ARADLVQLLENEKELEETDEYKDAFSVLESIKLDA |
| A..DLVQLLENEKELE.TD.YKDAF.VLESIKLDA | |
| Retrocopy | AQDDLVQLLENEKELEDTDKYKDAF*VLESIKLDA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .00 RPM | 130 .47 RPM |
| SRP009831_brain | 0 .00 RPM | 98 .80 RPM |
| SRP009831_dewlap | 0 .00 RPM | 67 .63 RPM |
| SRP009831_embryo | 0 .00 RPM | 95 .79 RPM |
| SRP009831_heart | 0 .00 RPM | 46 .64 RPM |
| SRP009831_liver | 0 .00 RPM | 54 .40 RPM |
| SRP009831_lung | 0 .00 RPM | 29 .77 RPM |
| SRP009831_ovary | 0 .00 RPM | 71 .19 RPM |
| SRP009831_skeletal_muscle | 0 .00 RPM | 12 .24 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_130 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_130 was not experimentally validated.