Parental gene:

PSMA5, ENSCPOG00000013670

Aliases:None
Description:Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:H0VP94]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_2:33563413..33582096(-)


>ENSCPOG00000013670
ATGTTCCTCACGCGATCGGAATACGACAGAGGTGTGAATACTTTTTCCCCTGAAGGAAGACTCTTTCAAGTGGAATATGC
CATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCGGAAGGTGTATGCCTAGCTGTGGAGAAGAGAA
TTACTTCCCCACTTATGGAGCCTAGCAGCATTGAGAAGATAGTAGAGATTGATGCTCATATAGGTTGTGCCATGAGTGGG
CTAATTGCTGATGCTAAGACTTTAATTGATAAGGCAAGAGTGGAAACACAGAACCATTGGTTTACCTATAATGAGACAAT
GACAGTAGAGAGTGTGACCCAAGCTGTGTCTAATCTGGCCCTACAGTTTGGAGAAGAAGATGCAGATCCAGGTGCCATGT
CTCGTCCCTTTGGAGTAGCACTGTTATTTGGAGGAGTTGATGAGAAGGGACCCCAGCTGTTTCATATGGACCCATCTGGG
ACCTTTGTACAGTGTGATGCTCGAGCAATTGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTTTACCATAA
GTCTATGACACTGAAAGAAGCCATCAAGTCTTCACTTATCATTCTCAAGCAAGTAATGGAAGAGAAGCTGAATGCAACTA
ACATAGAGCTAGCTACAGTGCAGCCTGGCCAGAATTTCCACATGTTCACAAAGGAAGAACTTGAAGAGGTTATTAAGGAC
ATTTAA

Library Parental gene expression (RPM)
SRP017611_brain 24 .39 RPM
SRP017611_kidney 49 .20 RPM
SRP017611_liver 55 .63 RPM
SRP040447_lung 42 .67 RPM
SRP040447_skeletal_muscle 42 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000011835 ortholog_one2one 1 retrogene
retro_ecab_1106,
Echinops telfairi ENSETEG00000012916 ortholog_one2one 1 retrogene
retro_etel_1053,
Mus musculus ENSMUSG00000068749 ortholog_one2many 1 retrogene
retro_mmus_52,
Ochotona princeps ENSOPRG00000008863 ortholog_one2one 1 retrogene
retro_opri_449,
Rattus norvegicus ENSRNOG00000019868 ortholog_one2one 2 retrogenes
retro_rnor_1230, retro_rnor_658,
Sus scrofa ENSSSCG00000006830 ortholog_one2one 2 retrogenes
retro_sscr_1156, retro_sscr_1194,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1063 79.55 72.61
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Download FASTA sequences of all ENSCPOG00000013670 retrocopies