Parental gene:

ENSSSCG00000006830

Aliases:None
Description:Sus scrofa proteasome (prosome, macropain) subunit, alpha type, 5 (PSMA5), mRNA. [Source:RefSeq mRNA;Acc:NM_001144901]
Organism:Pig (Sus scrofa)
Coordinates:4:121153781..121226070(+)


>ENSSSCG00000006830
ATGTTTCTTACCCGGTCTGAGTACGACAGGGGTGTGAACACTTTTTCTCCTGAAGGAAGATTATTTCAAGTGGAATATGC
CATTGAGGCTATCAAGCTTGGTTCTACAGCCATTGGGATCCAGACATCAGAGGGTGTGTGCCTAGCTGTGGAGAAGAGAA
TTACCTCTCCGCTCATGGAGCCCAGCAGCATTGAGAAGATTGTAGAGATTGATGCTCACATAGGTTGTGCCATGAGTGGG
CTAATTGCTGATGCTAAGACTTTAATTGATAAAGCCAGAGTGGAGACACAGAACCATTGGTTCACCTACAATGAGACAAT
GACAGTAGAGAGTGTGACTCAGGCTGTGTCAAATCTGGCTCTCCAGTTTGGAGAAGAGGATGCAGATCCAGGTGCCATGT
CTCGTCCCTTCGGAGTAGCACTGTTATTTGGAGGAGTTGATGAAAAAGGACCCCAGCTGTTTCATATGGATCCATCTGGA
ACGTTTGTACAGTGTGATGCTCGAGCAATCGGCTCTGCTTCAGAGGGTGCCCAGAGCTCCTTGCAAGAAGTCTACCACAA
GTCTATGACACTGAAAGAAGCCATCAAATCTTCACTCATAATCCTCAAGCAAGTAATGGAGGAGAAACTGAATGCAACTA
ACATAGAGCTAGCCACAGTGCAACCTGGCCAGAATTTCCACATGTTCACAAAGGAAGAACTCGAAGAGGTTATCAAGGAC
ATTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 23 .23 RPM
SRP014902_testis 24 .89 RPM
SRP018288_heart 32 .01 RPM
SRP018288_kidney 45 .31 RPM
SRP018288_liver 46 .21 RPM
SRP018288_lung 22 .71 RPM
SRP018856_adipose 57 .25 RPM
SRP035408_brain 49 .83 RPM
SRP035408_liver 51 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000013670 ortholog_one2one 1 retrogene
retro_cpor_1063,
Equus caballus ENSECAG00000011835 ortholog_one2one 1 retrogene
retro_ecab_1106,
Echinops telfairi ENSETEG00000012916 ortholog_one2one 1 retrogene
retro_etel_1053,
Myotis lucifugus ENSMLUG00000008497 possible_ortholog 2 retrogenes
retro_mluc_1002, retro_mluc_926,
Mustela putorius furo ENSMPUG00000003189 possible_ortholog 1 retrogene
retro_mputfur_1295,
Mus musculus ENSMUSG00000068749 ortholog_one2many 1 retrogene
retro_mmus_52,
Otolemur garnettii ENSOGAG00000013560 possible_ortholog 1 retrogene
retro_ogar_3137,
Ochotona princeps ENSOPRG00000008863 ortholog_one2one 1 retrogene
retro_opri_449,
Pteropus vampyrus ENSPVAG00000008908 possible_ortholog 1 retrogene
retro_pvam_222,
Rattus norvegicus ENSRNOG00000019868 ortholog_one2one 2 retrogenes
retro_rnor_1230, retro_rnor_658,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1156 52.71 52.70
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2. retro_sscr_1194 52.71 52.70
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Download FASTA sequences of all ENSSSCG00000006830 retrocopies