Parental gene:

FAM20B, ENSDNOG00000006175

Aliases:None
Description:family with sequence similarity 20, member B [Source:HGNC Symbol;Acc:23017]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2129:82042..225713(+)


>ENSDNOG00000006175
AGGGCTTTTCACCGAATGATGGCCAGCTTGCAGGTGGAGCTGAAGCCCAAGCTGGACCACACCTTGCAGTCCCCCTGGGA
GATTGCAGCCCAGTGGGTGGTTCCCCGGGAAGTGTACCCTGAAGAGACACCAGAGTTGGGGGCAATCATGCATGCCATGG
CCACCAAGAAAATCATTAAAGCTGATGTGGGTTATAAAGGAACACAACTGAAAGCCTTACTGATACTTGAAGGAGGTCAG
AAAGTAGTCTTCAAACCTAAGCGGTATAGCCGAGATTACGTGGTAGAAGGGGAACCATATGCTGGTTATGATCGACACAA
CGCAGAGGTAGCAGCCTTTCATTTGGACAGGATTTTGGGTTTCCGCCGTGCCCCCTTGGTGGTTGGCAGATTTGTTAACC
TGCGGACAGAGATCAAGCCTGTTGCCACGGAGCAGCTGTTGAGCACCTTCCTAACTGTAGGAAACAATACTTGCTTCTAC
GGGAAGTGTTATTACTGCCGAGAAACAGAGCCAGCTTGTGCCGATGGAGACACAATGGAGGGATCTGTTACACTCTGGCT
CCCAGATGTGTGGCCTCTGCAGAAACACCGACACCCATGGGGCAGGACTTACCGAGAGGGCAAATTGGCCAGGTGGGAGT
ATGATGAGAGCTACTGCGATGCTGTGAAGAAAACGTCCCCTTATGACTCTGGCCCACGCCTCCTGGACATCATTGACACA
GCTGTCTTTGATTACCTGATTGGCAATGCTGACCGCCATCACTACGAGAGCTTTCAAGATGATGAAGGCGCTAGTATGCT
CATCCTTCTTGATAATGCCAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCATTCGGGTTTCCACCTGGAACAGATTAAACTACTTAAAGAACGGTGTGCTGAAGTCTGCCTTAAAGTCTGCCATG
GCCCATGACCCCATCGCCCCAGTGCTCTCCGGGCTTCACCTGGACGCCGTGGACCCGCGGCTGCTGAGTGTCCTGGCCAC
TGTGAAGCAGTGCACTGACCAGTTTGGGGCAGACTCTGTGCTGGTGGAAGACAGGATGCCTCTCTCCCACTTGTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 34 .03 RPM
SRP012922_cerebellum 13 .33 RPM
SRP012922_heart 7 .43 RPM
SRP012922_kidney 17 .52 RPM
SRP012922_liver 5 .11 RPM
SRP012922_lung 17 .87 RPM
SRP012922_quadricep_muscle 15 .92 RPM
SRP012922_spleen 17 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005236 ortholog_one2one 6 retrogenes
retro_chof_1509, retro_chof_1926, retro_chof_2615, retro_chof_2629, retro_chof_799, retro_chof_868,
Echinops telfairi ENSETEG00000005651 ortholog_one2one 1 retrogene
retro_etel_1128,
Homo sapiens ENSG00000116199 ortholog_one2one 1 retrogene
retro_hsap_2730,
Gorilla gorilla ENSGGOG00000002484 ortholog_one2one 1 retrogene
retro_ggor_1899,
Macropus eugenii ENSMEUG00000006654 ortholog_one2one 1 retrogene
retro_meug_414,
Macaca mulatta ENSMMUG00000006260 ortholog_one2one 1 retrogene
retro_mmul_1533,
Nomascus leucogenys ENSNLEG00000015580 ortholog_one2one 1 retrogene
retro_nleu_592,
Otolemur garnettii ENSOGAG00000012751 ortholog_one2one 1 retrogene
retro_ogar_2800,
Pongo abelii ENSPPYG00000000466 ortholog_one2one 2 retrogenes
retro_pabe_2268, retro_pabe_2269,
Pan troglodytes ENSPTRG00000001725 ortholog_one2one 1 retrogene
retro_ptro_1845,
Ictidomys tridecemlineatus ENSSTOG00000005086 ortholog_one2one 2 retrogenes
retro_itri_441, retro_itri_539,
Tarsius syrichta ENSTSYG00000005482 ortholog_one2one 3 retrogenes
retro_tsyr_2065, retro_tsyr_2124, retro_tsyr_89,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1484 63.56 60.11
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2. retro_dnov_2346 89.95 50.94
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Download FASTA sequences of all ENSDNOG00000006175 retrocopies