Parental gene: | FAM20B, ENSPPYG00000000466 |
| Aliases: | None |
| Description: | family with sequence similarity 20, member B [Source:HGNC Symbol;Acc:23017] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:71783962..71817873(-) |
>ENSPPYG00000000466
ATGAAGCTAAAGCAGCGAGTCGTGCTGTTAGCAATTCTCCTTGTCATTTTTATCTTCACCAAAGTTTTCCTGATTGACAA
CTTAGATACATCAGCTGCCAACCGGGAGGACCAGAGGGCCTTTCACCGAATGATGACTGGCTTGCGGGTGGAGCTGGCAC
CCAAGCTGGACCATACCTTGCAGTCTCCCTGGGAGATTGCAGCCCAGTGGGTCGTTCCCCGGGAAGTGTACCCTGAAGAG
ACACCAGAGCTGGGGGCAATCATGCATGCCATGGCCACCAAGAAAATCATTAAAGCTGATGTGGGTTATAAAGGGACACA
GCTGAAAGCCTTACTGATACTTGAAGGAGGACAGAAAGTTGTTTTCAAACCTAAGCGGTATAGCCGAGACTATGTGGTGG
AAGGGGAACCGTATGCTGGTTATGATAGACACAATGCTGAGGTAGCAGCCTTTCACTTGGACAGGATTCTGGGTTTCCGC
CGAGCCCCCTTGGTAGTTGGCAGATTTGTTAATCTTCGGACAGAGATCAAACCTGTTGCCACAGAGCAGCTGTTGAGCAC
CTTCCTAACTGTAGGAAACAATACTTGTTTTTATGGGAAGTGCTATTACTGCCGAGAAACAGAACCAGCTTGTGCTGATG
GAGACACAATGGAGGGATCTGTCACACTTTGGCTTCCAGATGTGTGGCCTCTGCAGAAGCACCGTCACCCATGGGGCAGG
ACTTACCGAGAAGGCAAATTGGCCAGGTGGGAGTATGATGAGAGCTACTGTGATGCTGTGAAGAAAACGTCCCCTTATGA
CTCTGGCCCGCGCCTCTTGGACATCATTGACACAGCTGTGTTTGATTACCTGATTGGCAATGCTGACCGCCATCACTATG
AGAGCTTTCAAGATGATGAAGGCGCTAGTATGCTCATCCTTCTTGATAATGCCAAAAGCTTTGGGAACCCCTCGCTGGAT
GAAAGAAGCATTCTTGCCCCTCTGTATCAGTGTTGCATCATTCGGGTGTCTACCTGGAACAGACTGAACTACCTAAAGAA
TGGTGTGCTAAAGTCTGCCTTAAAATCCGCCATGGCCCATGACCCCATCTCCCCAGTGCTCTCTGATCCTCATCTGGACG
CCGTGGACCAGCGGCTCCTGAGTGTCCTGGCCACCGTGAAGCAGTGCACCGACCAGTTTGGGATGGACACAGTACTGGTG
GAAGACAGGATGCCTCTCTCACACTTGTAA
ATGAAGCTAAAGCAGCGAGTCGTGCTGTTAGCAATTCTCCTTGTCATTTTTATCTTCACCAAAGTTTTCCTGATTGACAA
CTTAGATACATCAGCTGCCAACCGGGAGGACCAGAGGGCCTTTCACCGAATGATGACTGGCTTGCGGGTGGAGCTGGCAC
CCAAGCTGGACCATACCTTGCAGTCTCCCTGGGAGATTGCAGCCCAGTGGGTCGTTCCCCGGGAAGTGTACCCTGAAGAG
ACACCAGAGCTGGGGGCAATCATGCATGCCATGGCCACCAAGAAAATCATTAAAGCTGATGTGGGTTATAAAGGGACACA
GCTGAAAGCCTTACTGATACTTGAAGGAGGACAGAAAGTTGTTTTCAAACCTAAGCGGTATAGCCGAGACTATGTGGTGG
AAGGGGAACCGTATGCTGGTTATGATAGACACAATGCTGAGGTAGCAGCCTTTCACTTGGACAGGATTCTGGGTTTCCGC
CGAGCCCCCTTGGTAGTTGGCAGATTTGTTAATCTTCGGACAGAGATCAAACCTGTTGCCACAGAGCAGCTGTTGAGCAC
CTTCCTAACTGTAGGAAACAATACTTGTTTTTATGGGAAGTGCTATTACTGCCGAGAAACAGAACCAGCTTGTGCTGATG
GAGACACAATGGAGGGATCTGTCACACTTTGGCTTCCAGATGTGTGGCCTCTGCAGAAGCACCGTCACCCATGGGGCAGG
ACTTACCGAGAAGGCAAATTGGCCAGGTGGGAGTATGATGAGAGCTACTGTGATGCTGTGAAGAAAACGTCCCCTTATGA
CTCTGGCCCGCGCCTCTTGGACATCATTGACACAGCTGTGTTTGATTACCTGATTGGCAATGCTGACCGCCATCACTATG
AGAGCTTTCAAGATGATGAAGGCGCTAGTATGCTCATCCTTCTTGATAATGCCAAAAGCTTTGGGAACCCCTCGCTGGAT
GAAAGAAGCATTCTTGCCCCTCTGTATCAGTGTTGCATCATTCGGGTGTCTACCTGGAACAGACTGAACTACCTAAAGAA
TGGTGTGCTAAAGTCTGCCTTAAAATCCGCCATGGCCCATGACCCCATCTCCCCAGTGCTCTCTGATCCTCATCTGGACG
CCGTGGACCAGCGGCTCCTGAGTGTCCTGGCCACCGTGAAGCAGTGCACCGACCAGTTTGGGATGGACACAGTACTGGTG
GAAGACAGGATGCCTCTCTCACACTTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 68 .45 RPM |
| SRP007412_cerebellum | 58 .98 RPM |
| SRP007412_heart | 65 .17 RPM |
| SRP007412_kidney | 51 .21 RPM |
| SRP007412_liver | 28 .31 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000005236 | ortholog_one2one | 6 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006175 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000005651 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000116199 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000002484 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006654 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006260 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015580 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012751 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001725 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000005086 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005482 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2268 | 78.59 | 92.91 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2269 | 78.33 | 92.91 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000000466 retrocopies