Parental gene: | AMD1, ENSDNOG00000006867 |
| Aliases: | None |
| Description: | adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_2527:2136..19381(+) |
>ENSDNOG00000006867
ATGGAAGCTGCACATTTTTTCGAAGGCACCGAGAAGCTGCTGGAGGTTTGGTTCTCCCGGCAGCAGCCCGACGCAAAACA
AGGATCTGGGGATCTCCGCACCATCCCAAGATCTGAGTGGGACATACTTTTGAAGGATGTGCAATGTTCAATCATAAGTG
TGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAG
ACATGTGGTACCACCCTCTTACTGAAAGCACTGGTTCCCCTGTTGAAGCTTGCTAGGGATTACAGTGGGTTTGACTCAAT
TCAAAGCTTCTTTTATTCTCGTAAGAATTTCATGAAGCCTTCTCACCAAGGGTACCCACACCGGAATTTCCAGGAAGAAA
TCGAGTTTCTTAATGCAATTTTCCCAAATGGAGCAGCATATTGTATGGGACGGATGAATTCTGACTGTTGGTACTTGTAT
ACTCTGGATTTCCCAGAGACTCGTGTAATCAGTCAGCCAGATCAAACCCTGGAAATTCTGATGAGTGAGCTTGACCCAGC
AGTTATGGACCAGTTCTACATGAAAGATGGTGTTACTGCAAAGGATGTCACTCGTGAGAGTGGAATTCGTGACCTGATAC
CAGGTTCTGTCATTGATGCCACACTGTTCAATCCTTGTGGGTATTCAATGAATGGAANNNNNNNNNNNNNAACTTATTGG
ACTATTCACATCACTCCAGAACCAGAATTTTCTTATGTTAGCTTTGAAACAAACTTAAGTCTGACCTCCTATGATGACCT
GATCAGGAAAGTTGTGGAAGTCTTCAAGCCTGGAAAATTTGTGACCACGTTGTTTGTAAATCAGAGTTCTAAATGTCGCA
CAGTGCTTTCTTCACCCCAGAAGATAGAAGGTTTCAAACGTCTTGATTGCCAGAGTGCTATGTTCAATGATTACAACTTT
GTTTTTACCAGCTTTGCCAAGAATCAGCAACAACAGCAGAGTTGA
ATGGAAGCTGCACATTTTTTCGAAGGCACCGAGAAGCTGCTGGAGGTTTGGTTCTCCCGGCAGCAGCCCGACGCAAAACA
AGGATCTGGGGATCTCCGCACCATCCCAAGATCTGAGTGGGACATACTTTTGAAGGATGTGCAATGTTCAATCATAAGTG
TGACAAAAACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAG
ACATGTGGTACCACCCTCTTACTGAAAGCACTGGTTCCCCTGTTGAAGCTTGCTAGGGATTACAGTGGGTTTGACTCAAT
TCAAAGCTTCTTTTATTCTCGTAAGAATTTCATGAAGCCTTCTCACCAAGGGTACCCACACCGGAATTTCCAGGAAGAAA
TCGAGTTTCTTAATGCAATTTTCCCAAATGGAGCAGCATATTGTATGGGACGGATGAATTCTGACTGTTGGTACTTGTAT
ACTCTGGATTTCCCAGAGACTCGTGTAATCAGTCAGCCAGATCAAACCCTGGAAATTCTGATGAGTGAGCTTGACCCAGC
AGTTATGGACCAGTTCTACATGAAAGATGGTGTTACTGCAAAGGATGTCACTCGTGAGAGTGGAATTCGTGACCTGATAC
CAGGTTCTGTCATTGATGCCACACTGTTCAATCCTTGTGGGTATTCAATGAATGGAANNNNNNNNNNNNNAACTTATTGG
ACTATTCACATCACTCCAGAACCAGAATTTTCTTATGTTAGCTTTGAAACAAACTTAAGTCTGACCTCCTATGATGACCT
GATCAGGAAAGTTGTGGAAGTCTTCAAGCCTGGAAAATTTGTGACCACGTTGTTTGTAAATCAGAGTTCTAAATGTCGCA
CAGTGCTTTCTTCACCCCAGAAGATAGAAGGTTTCAAACGTCTTGATTGCCAGAGTGCTATGTTCAATGATTACAACTTT
GTTTTTACCAGCTTTGCCAAGAATCAGCAACAACAGCAGAGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 31 .31 RPM |
| SRP012922_cerebellum | 23 .23 RPM |
| SRP012922_heart | 14 .39 RPM |
| SRP012922_kidney | 12 .05 RPM |
| SRP012922_liver | 25 .39 RPM |
| SRP012922_lung | 18 .79 RPM |
| SRP012922_quadricep_muscle | 12 .46 RPM |
| SRP012922_spleen | 34 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003500 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000003342 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000003905 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000009171 | ortholog_one2one | 9 retrogenes | |
| Callithrix jacchus | ENSCJAG00000005257 | ortholog_one2one | 6 retrogenes | |
| Equus caballus | ENSECAG00000011198 | ortholog_one2many | 4 retrogenes | |
| Felis catus | ENSFCAG00000028033 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000123505 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006466 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000013203 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000010630 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005666 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000000535 | ortholog_one2many | 6 retrogenes | |
| Mus musculus | ENSMUSG00000075232 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012818 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030150 | possible_ortholog | 7 retrogenes | |
| Pongo abelii | ENSPPYG00000016924 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000018501 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000585 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000014387 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000004392 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000205 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_63 | 71.68 | 51.20 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_185 | 70.90 | 54.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_315 | 82.72 | 89.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_357 | 66.46 | 94.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_752 | 71.83 | 82.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_dnov_770 | 71.68 | 67.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_dnov_1736 | 85.95 | 55.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_dnov_1796 | 75.79 | 56.59 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_dnov_2436 | 74.43 | 51.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_dnov_2653 | 61.40 | 51.20 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000006867 retrocopies