RetrogeneDB ID: | retro_itri_598 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393305.1:7872256..7872905(+) | ||
Located in intron of: | ENSSTOG00000008229 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMD1 | ||
Ensembl ID: | ENSSTOG00000000205 | ||
Aliases: | None | ||
Description: | adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457] |
Percent Identity: | 66.37 % |
Parental protein coverage: | 65.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAAYCM-GRMNSDCWYLYTLDFPESRVISQPDQTL |
S.F.S...FMKPSHQ.YP..NFQEEIE.LNA.FPNGA..CM...MNSD...L.....P.....SQ..... | |
Retrocopy | SGFDSFQSFMKPSHQ*YPNQNFQEEIELLNAVFPNGAT*CM>NVMNSDYLELVYSGVPRESGNSQ----I |
Parental | EILMSELDPAVMDQFYMKDGVTAKDVTRESGICDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPE |
EIL.SELDPAVMDQFY.KD.VTAK.VT.ES.ICDLI..............YSMNGMKSDGTY.T.HITPE | |
Retrocopy | EILTSELDPAVMDQFYRKDCVTAKNVTQESRICDLIDSRFCHQCHTVQSWYSMNGMKSDGTYGTVHITPE |
Parental | PEFSYVSFETNLSQTSYDDL-IRKVVEVFKPGKF-VTTLFVNQSSKCRTVLSSPQKMEGFKRLDCQSAMF |
P...YV.FETNLSQ.SYDDL...KVVEV.KPGK..VTTLFVNQSSK..TVLSSPQK.EG.K..DC.SA.F | |
Retrocopy | PVVPYVKFETNLSQPSYDDL<LGKVVEVLKPGKH>VTTLFVNQSSKFHTVLSSPQKTEGLKVFDCKSAVF |
Parental | NDYNFVFTSFAKK |
NDY.FVFTSFAKK | |
Retrocopy | NDYSFVFTSFAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |