RetrogeneDB ID: | retro_pabe_2977 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:88373891..88374488(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMD1 | ||
Ensembl ID: | ENSPPYG00000016924 | ||
Aliases: | None | ||
Description: | adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:457] |
Percent Identity: | 63.77 % |
Parental protein coverage: | 60.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | HRNFQEEIEFLNAIFPNGAAYCMGRMNSDCWYLYTL-DFPESRVISQPDQTLEILM-SELDPAVMDQFYM |
H........FLN.IFP.G.AYCM...NSDCWYLY.L..FP......Q.D.TLEIL..S.LD.AVM.Q.Y. | |
Retrocopy | HTRISRKKQFLNIIFPSGTAYCMECVNSDCWYLYIL>GFPRESG-KQTD*TLEILI<S*LDQAVMNQSYV |
Parental | KDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFS-YVSFETNLSQTS |
KDG.T.KDVT.ESG..DLI.GS...AT..NPCGY..NGMKS.G.Y.TIHITPE.EF..YVSF.T..SQT. | |
Retrocopy | KDGITTKDVTHESGNSDLILGS---ATLLNPCGYLINGMKSVGIYQTIHITPETEFF<YVSFKTTISQTF |
Parental | YDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQK-IEGFKRLDCQSAMFNDYNFVFTSFAKKQ |
YDDLI.KVVEVF..GK..TTL.VN.S.KC...L..P....EGFK..DCQS.MFNDYNFVFTSFAKKQ | |
Retrocopy | YDDLIGKVVEVFHAGKVFTTLLVNHSFKCHSLLSLPLE>VEGFKCPDCQSTMFNDYNFVFTSFAKKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .10 RPM |
SRP007412_cerebellum | 0 .00 RPM | 74 .30 RPM |
SRP007412_heart | 0 .00 RPM | 27 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 33 .15 RPM |
SRP007412_liver | 0 .00 RPM | 14 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3630 |