Parental gene:

CDK2AP1, ENSDNOG00000017145

Aliases:None
Description:cyclin-dependent kinase 2 associated protein 1 [Source:HGNC Symbol;Acc:14002]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1811:4735..9065(-)


>ENSDNOG00000017145
GGAAGCGTCCACTCTCCTTCTACCAGCATGGCGACATCCTCGCAGTACCGCCAGCTGCTGAGTGACTACGGGCCGCCATC
CCTTGGCTACACCCAGGGAACTGGGAACAGCCAGGTGCCCCAAAGCAAATATGCTGAGCTGCTGGCCATCATCGAAGAGC
TGGGGAAAGAGATCAGACCCACCTACGCAGGGAGCAAGAGCGCCATGGAGAGATTGAAACGAGGCATCATTCACGCTAGA
GGACTGGTTCGGGAGTGCTTGGCCGAAACAGAACGGAATGCCAGATCCTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 4 .86 RPM
SRP012922_cerebellum 9 .90 RPM
SRP012922_heart 5 .57 RPM
SRP012922_kidney 4 .65 RPM
SRP012922_liver 1 .24 RPM
SRP012922_lung 8 .25 RPM
SRP012922_quadricep_muscle 2 .94 RPM
SRP012922_spleen 12 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015147 ortholog_one2many 1 retrogene
retro_amel_19,
Choloepus hoffmanni ENSCHOG00000010939 possible_ortholog 1 retrogene
retro_chof_56,
Felis catus ENSFCAG00000026822 ortholog_one2one 1 retrogene
retro_fcat_1578,
Homo sapiens ENSG00000111328 ortholog_one2one 2 retrogenes
retro_hsap_2227, retro_hsap_2834,
Gorilla gorilla ENSGGOG00000009567 ortholog_one2one 1 retrogene
retro_ggor_1968,
Macropus eugenii ENSMEUG00000009438 ortholog_one2many 12 retrogenes
retro_meug_1101, retro_meug_1112, retro_meug_1218, retro_meug_1366, retro_meug_1509, retro_meug_1565, retro_meug_2116, retro_meug_377, retro_meug_404, retro_meug_669, retro_meug_836, retro_meug_868,
Monodelphis domestica ENSMODG00000012451 ortholog_one2many 2 retrogenes
retro_mdom_1845, retro_mdom_611,
Mustela putorius furo ENSMPUG00000001667 ortholog_one2one 1 retrogene
retro_mputfur_1601,
Mus musculus ENSMUSG00000029394 ortholog_one2many 1 retrogene
retro_mmus_125,
Nomascus leucogenys ENSNLEG00000001478 ortholog_one2one 2 retrogenes
retro_nleu_1209, retro_nleu_2686,
Otolemur garnettii ENSOGAG00000024823 ortholog_one2one 1 retrogene
retro_ogar_2292,
Pongo abelii ENSPPYG00000005083 ortholog_one2one 2 retrogenes
retro_pabe_1974, retro_pabe_2198,
Pan troglodytes ENSPTRG00000005596 ortholog_one2one 3 retrogenes
retro_ptro_1574, retro_ptro_1921, retro_ptro_2929,
Pteropus vampyrus ENSPVAG00000015302 ortholog_one2one 1 retrogene
retro_pvam_478,
Rattus norvegicus ENSRNOG00000001070 ortholog_one2many 3 retrogenes
retro_rnor_1717, retro_rnor_1718, retro_rnor_1753,
Sarcophilus harrisii ENSSHAG00000015009 ortholog_one2many 1 retrogene
retro_shar_366,
Sus scrofa ENSSSCG00000009775 ortholog_one2one 2 retrogenes
retro_sscr_992, retro_sscr_993,
Tursiops truncatus ENSTTRG00000015881 ortholog_one2one 2 retrogenes
retro_ttru_312, retro_ttru_464,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_69 98.96 100.00
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2. retro_dnov_70 70.65 94.79
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3. retro_dnov_270 75.51 100.00
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4. retro_dnov_687 92.71 100.00
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5. retro_dnov_729 88.66 100.00
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6. retro_dnov_741 89.69 100.00
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7. retro_dnov_1094 87.63 100.00
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8. retro_dnov_1097 88.66 100.00
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9. retro_dnov_1236 78.12 100.00
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10. retro_dnov_1502 91.75 100.00
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11. retro_dnov_1569 54.35 93.75
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12. retro_dnov_1656 75.25 100.00
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13. retro_dnov_1750 91.75 100.00
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14. retro_dnov_1979 91.75 100.00
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15. retro_dnov_2000 90.72 100.00
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16. retro_dnov_2145 91.67 98.96
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17. retro_dnov_2249 82.65 100.00
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18. retro_dnov_2527 91.75 100.00
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19. retro_dnov_2661 85.57 100.00
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20. retro_dnov_2662 66.67 100.00
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21. retro_dnov_2673 88.54 98.96
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Download FASTA sequences of all ENSDNOG00000017145 retrocopies