Parental gene:

CDK2AP1, ENSSSCG00000009775

Aliases:None
Description:cyclin-dependent kinase 2 associated protein 1 [Source:HGNC Symbol;Acc:14002]
Organism:Pig (Sus scrofa)
Coordinates:14:31326045..31331718(+)


>ENSSSCG00000009775
GCTGGGAGTGTCCACCCGCCCTCCACCAGTATGGCGACATCTTCACAGTACCGCCAGCTGCTGAGTGACTATGGGCCACC
ATCTCTAGGCTATACCCAGGGAACCGGTAACAGCCAGGTGCCCCAGAGCAAATACGCTGAGCTGCTGGCCATCATCGAAG
AGCTGGGGAAAGAGATCAGACCCACCTATGCAGGCAGCAAGAGCGCAATGGAGAGACTAAAACGAGGCATCATCCACGCT
AGAGGCTTGGTGAGGGAGTGCTTGGCTGAAACGGAACGGAACGCCAGGTCCTAG

Library Parental gene expression (RPM)
SRP014902_placenta 10 .09 RPM
SRP014902_testis 42 .15 RPM
SRP018288_heart 26 .32 RPM
SRP018288_kidney 9 .06 RPM
SRP018288_liver 4 .64 RPM
SRP018288_lung 6 .21 RPM
SRP018856_adipose 22 .62 RPM
SRP035408_brain 32 .27 RPM
SRP035408_liver 7 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015147 ortholog_one2one 1 retrogene
retro_amel_19,
Choloepus hoffmanni ENSCHOG00000010939 possible_ortholog 1 retrogene
retro_chof_56,
Dasypus novemcinctus ENSDNOG00000017145 ortholog_one2one 21 retrogenes
retro_dnov_1094, retro_dnov_1097, retro_dnov_1236, retro_dnov_1502, retro_dnov_1569, retro_dnov_1656, retro_dnov_1750, retro_dnov_1979, retro_dnov_2000, retro_dnov_2145, retro_dnov_2249, retro_dnov_2527, retro_dnov_2661, retro_dnov_2662, retro_dnov_2673, retro_dnov_270, retro_dnov_687, retro_dnov_69, retro_dnov_70, retro_dnov_729, retro_dnov_741,
Felis catus ENSFCAG00000026822 ortholog_one2one 1 retrogene
retro_fcat_1578,
Homo sapiens ENSG00000111328 ortholog_one2one 2 retrogenes
retro_hsap_2227, retro_hsap_2834,
Gorilla gorilla ENSGGOG00000009567 ortholog_one2one 1 retrogene
retro_ggor_1968,
Macropus eugenii ENSMEUG00000009438 ortholog_one2one 12 retrogenes
retro_meug_1101, retro_meug_1112, retro_meug_1218, retro_meug_1366, retro_meug_1509, retro_meug_1565, retro_meug_2116, retro_meug_377, retro_meug_404, retro_meug_669, retro_meug_836, retro_meug_868,
Monodelphis domestica ENSMODG00000012451 ortholog_one2one 2 retrogenes
retro_mdom_1845, retro_mdom_611,
Mustela putorius furo ENSMPUG00000001667 ortholog_one2one 1 retrogene
retro_mputfur_1601,
Mus musculus ENSMUSG00000029394 ortholog_one2many 1 retrogene
retro_mmus_125,
Nomascus leucogenys ENSNLEG00000001478 ortholog_one2one 2 retrogenes
retro_nleu_1209, retro_nleu_2686,
Otolemur garnettii ENSOGAG00000024823 ortholog_one2one 1 retrogene
retro_ogar_2292,
Pongo abelii ENSPPYG00000005083 ortholog_one2one 2 retrogenes
retro_pabe_1974, retro_pabe_2198,
Pan troglodytes ENSPTRG00000005596 ortholog_one2one 3 retrogenes
retro_ptro_1574, retro_ptro_1921, retro_ptro_2929,
Pteropus vampyrus ENSPVAG00000015302 ortholog_one2one 1 retrogene
retro_pvam_478,
Rattus norvegicus ENSRNOG00000001070 ortholog_one2many 3 retrogenes
retro_rnor_1717, retro_rnor_1718, retro_rnor_1753,
Sarcophilus harrisii ENSSHAG00000015009 ortholog_one2one 1 retrogene
retro_shar_366,
Tursiops truncatus ENSTTRG00000015881 ortholog_one2one 2 retrogenes
retro_ttru_312, retro_ttru_464,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_992 71.43 100.00
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2. retro_sscr_993 71.43 100.00
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Download FASTA sequences of all ENSSSCG00000009775 retrocopies