Parental gene:

Cdk2ap1, ENSRNOG00000001070

Aliases:None
Description:cyclin-dependent kinase 2-associated protein 1 [Source:RefSeq peptide;Acc:NP_001107223]
Organism:Rat (Rattus norvegicus)
Coordinates:12:39538930..39549784(+)


>ENSRNOG00000001070
ATGTCGTACAAGCCGAACTTGACCGCGCACATGCCCGCCGCCGCCCTCAACGCCGGGAGTGTCCATTCACCGTCTACTAG
CATGGCGACCTCCTCCCAGTATCGCCAGCTGCTGAGTGACTATGGGCCTCCATCGCTAGGCTACACCCAGGGAACTGGAA
ATAGCCAGGTGCCTCAGAGTAAATATGCAGAGCTGCTGGCCATCATTGAAGAGTTGGGGAAAGAGATCAGACCCACGTAT
GCAGGGAGCAAGAGTGCCATGGAGAGGCTAAAACGAGGCATCATTCATGCCCGAAGCCTGGTTCGGGAGTGCTTGGCTGA
AACGGAACGGAACGCCAGGTCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 62 .05 RPM
SRP017611_kidney 45 .57 RPM
SRP017611_liver 19 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015147 ortholog_many2many 1 retrogene
retro_amel_19,
Choloepus hoffmanni ENSCHOG00000010939 possible_ortholog 1 retrogene
retro_chof_56,
Dasypus novemcinctus ENSDNOG00000017145 ortholog_one2many 21 retrogenes
retro_dnov_1094, retro_dnov_1097, retro_dnov_1236, retro_dnov_1502, retro_dnov_1569, retro_dnov_1656, retro_dnov_1750, retro_dnov_1979, retro_dnov_2000, retro_dnov_2145, retro_dnov_2249, retro_dnov_2527, retro_dnov_2661, retro_dnov_2662, retro_dnov_2673, retro_dnov_270, retro_dnov_687, retro_dnov_69, retro_dnov_70, retro_dnov_729, retro_dnov_741,
Felis catus ENSFCAG00000026822 ortholog_one2many 1 retrogene
retro_fcat_1578,
Homo sapiens ENSG00000111328 ortholog_one2many 2 retrogenes
retro_hsap_2227, retro_hsap_2834,
Gorilla gorilla ENSGGOG00000009567 ortholog_one2many 1 retrogene
retro_ggor_1968,
Macropus eugenii ENSMEUG00000009438 ortholog_one2many 12 retrogenes
retro_meug_1101, retro_meug_1112, retro_meug_1218, retro_meug_1366, retro_meug_1509, retro_meug_1565, retro_meug_2116, retro_meug_377, retro_meug_404, retro_meug_669, retro_meug_836, retro_meug_868,
Macaca mulatta ENSMMUG00000000434 possible_ortholog 1 retrogene
retro_mmul_1507,
Monodelphis domestica ENSMODG00000012451 ortholog_one2many 2 retrogenes
retro_mdom_1845, retro_mdom_611,
Mustela putorius furo ENSMPUG00000001667 ortholog_one2many 1 retrogene
retro_mputfur_1601,
Nomascus leucogenys ENSNLEG00000001478 ortholog_one2many 2 retrogenes
retro_nleu_1209, retro_nleu_2686,
Otolemur garnettii ENSOGAG00000024823 ortholog_one2many 1 retrogene
retro_ogar_2292,
Pongo abelii ENSPPYG00000005083 ortholog_one2many 2 retrogenes
retro_pabe_1974, retro_pabe_2198,
Pan troglodytes ENSPTRG00000005596 ortholog_one2many 3 retrogenes
retro_ptro_1574, retro_ptro_1921, retro_ptro_2929,
Pteropus vampyrus ENSPVAG00000015302 ortholog_one2many 1 retrogene
retro_pvam_478,
Sarcophilus harrisii ENSSHAG00000015009 ortholog_one2many 1 retrogene
retro_shar_366,
Sus scrofa ENSSSCG00000009775 ortholog_one2many 2 retrogenes
retro_sscr_992, retro_sscr_993,
Ictidomys tridecemlineatus ENSSTOG00000016464 possible_ortholog 1 retrogene
retro_itri_1198,
Tursiops truncatus ENSTTRG00000015881 ortholog_one2many 2 retrogenes
retro_ttru_312, retro_ttru_464,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1717 75.00 97.37
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2. retro_rnor_1718 74.65 61.40
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3. retro_rnor_1753 73.91 99.12
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Download FASTA sequences of all ENSRNOG00000001070 retrocopies