Parental gene:

CDK2AP1, ENSPTRG00000005596

Aliases:None
Description:cyclin-dependent kinase 2 associated protein 1 [Source:HGNC Symbol;Acc:14002]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:124099495..124105799(-)


>ENSPTRG00000005596
GCTGACTCCTGGCCTCTCTCTCCCCACCCCACAGCTGGGAGTGTCCACTCGCCTTCCACCAGCATGGCAACGTCTTCACA
GTACCGCCAGCTGCTCAGTGACTACGGGCCACCGTCCCTAGGCTACACCCAGGGAACTGGGAACAGCCAGGTGCCCCAAA
GCAAATACGCGGAGCTGCTGGCCATCATTGAAGAGCTGGGGAAGGAGATCAGACCCACGTACGCAGGGAGCAAGAGTGCC
ATGGAGAGGCTGAAGCGCGGCATCATTCACGCTAGAGGACTGGTTCGGGAGTGCTTGGCAGAAACGGAACGGAATGCCAG
ATCCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 68 .14 RPM
SRP007412_cerebellum 53 .70 RPM
SRP007412_heart 24 .10 RPM
SRP007412_kidney 32 .48 RPM
SRP007412_liver 23 .18 RPM
SRP007412_testis 42 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015147 ortholog_one2many 1 retrogene
retro_amel_19,
Choloepus hoffmanni ENSCHOG00000010939 possible_ortholog 1 retrogene
retro_chof_56,
Dasypus novemcinctus ENSDNOG00000017145 ortholog_one2one 21 retrogenes
retro_dnov_1094, retro_dnov_1097, retro_dnov_1236, retro_dnov_1502, retro_dnov_1569, retro_dnov_1656, retro_dnov_1750, retro_dnov_1979, retro_dnov_2000, retro_dnov_2145, retro_dnov_2249, retro_dnov_2527, retro_dnov_2661, retro_dnov_2662, retro_dnov_2673, retro_dnov_270, retro_dnov_687, retro_dnov_69, retro_dnov_70, retro_dnov_729, retro_dnov_741,
Felis catus ENSFCAG00000026822 ortholog_one2one 1 retrogene
retro_fcat_1578,
Homo sapiens ENSG00000111328 ortholog_one2one 2 retrogenes
retro_hsap_2227, retro_hsap_2834,
Gorilla gorilla ENSGGOG00000009567 ortholog_one2one 1 retrogene
retro_ggor_1968,
Macropus eugenii ENSMEUG00000009438 ortholog_one2one 12 retrogenes
retro_meug_1101, retro_meug_1112, retro_meug_1218, retro_meug_1366, retro_meug_1509, retro_meug_1565, retro_meug_2116, retro_meug_377, retro_meug_404, retro_meug_669, retro_meug_836, retro_meug_868,
Monodelphis domestica ENSMODG00000012451 ortholog_one2one 2 retrogenes
retro_mdom_1845, retro_mdom_611,
Mustela putorius furo ENSMPUG00000001667 ortholog_one2one 1 retrogene
retro_mputfur_1601,
Mus musculus ENSMUSG00000029394 ortholog_one2many 1 retrogene
retro_mmus_125,
Nomascus leucogenys ENSNLEG00000001478 ortholog_one2one 2 retrogenes
retro_nleu_1209, retro_nleu_2686,
Otolemur garnettii ENSOGAG00000024823 ortholog_one2one 1 retrogene
retro_ogar_2292,
Pongo abelii ENSPPYG00000005083 ortholog_one2one 2 retrogenes
retro_pabe_1974, retro_pabe_2198,
Pan troglodytes ENSPTRG00000003966 within_species_paralog 9 retrogenes
retro_ptro_2508, retro_ptro_2973, retro_ptro_2976, retro_ptro_3002, retro_ptro_3003, retro_ptro_3004, retro_ptro_3005, retro_ptro_3008, retro_ptro_3009,
Pteropus vampyrus ENSPVAG00000015302 ortholog_one2one 1 retrogene
retro_pvam_478,
Rattus norvegicus ENSRNOG00000001070 ortholog_one2many 3 retrogenes
retro_rnor_1717, retro_rnor_1718, retro_rnor_1753,
Sarcophilus harrisii ENSSHAG00000015009 ortholog_one2one 1 retrogene
retro_shar_366,
Sus scrofa ENSSSCG00000009775 ortholog_one2one 2 retrogenes
retro_sscr_992, retro_sscr_993,
Tursiops truncatus ENSTTRG00000015881 ortholog_one2one 2 retrogenes
retro_ttru_312, retro_ttru_464,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1574 81.73 95.37
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2. retro_ptro_1921 70.97 84.26
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3. retro_ptro_2929 82.86 95.37
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Download FASTA sequences of all ENSPTRG00000005596 retrocopies