Parental gene:

SUPT20H, ENSECAG00000000116

Aliases:None
Description:suppressor of Ty 20 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20596]
Organism:Horse (Equus caballus)
Coordinates:17:15683069..15720184(-)


>ENSECAG00000000116
ATGCAACAAGCTTTGGAACTAGCTTTGGATCGTGCAGAGTACGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTGTCTAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTATATATTGAAGAATGTGAAAAAGAGCCTGAGG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTGGAGAAGCTTGTTATGCAGGAGACATTGTCGTGTTTAGTGGTCAACCTA
TACCCAGGAAATGAGGGATATTCTCTGATGCTCAGGGGAAAAAATGGATCAGATTCTGAGACCATTCGACTGCCTTATGA
AGAAGGGGAATTACTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGTGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAATATGAAATCTCCTGGTTACCAA
AGTAGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATCTGTGATGTACATTCAATTACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAACTGATCCTTGCTACAGCTGAACCACTATGTCTTGACCCTTCTATCG
CCGTAACCTGCACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACACGCCCAATGAAACGGTGTTTCAAGAGG
TATTCTAGGTCCTCTCTCAATCGGCAGCAGGATCTGTCTCACTGTCCACCTCCTCCTCAGCTAAAATTACTTGATTTCTT
ACAAAAAAGAAAGGAAAGAAAAGCAGGTCAGCATTATGACCTCAAAATTTCTAAAGCAGGAAATTGTGTAGATATGTGGA
AGCAGAGTCCCTGTAACTTGGCCATACCTTCAGAAGTGGATGTGGAGAAATATGCTAAAGTGGAGAAGTCTATCAAATCT
GATGACTCACAACCAACAGTCTGGCCAGCCCATGATGTAAAAGATGATTATGTATTTGAATGCGAAGCTGGTAATCAGTA
TCAGAAAACAAAGCTGACCATTTTACAGTCACTTGGTGATCCACTTTACTATGGTAGAATACAGCCATGTAAAGAAGATG
AAGAAAGTGACAGCCAGATGTCTCCATCCCACTCCTCCACAGATGATCATTCAAATTGGTTCATTATTGGATCAAAGACT
GATGCTGAGAGGGTAGTCAATCAGTACCAGGAATTGGTTCAGAATGAAGCCAAATGTCCAGTCAAGATGTCACACAGCTC
CAGTGGCTCAGCCAGCTTGAGTCAGCTTTCTCCAGGGAAAGACACAGAACAGCCTGAGACTGTGTCAGTTCAGTCTTCAG
TATTGGGGAAGGGAGTAAAACATCGACCTCCACCCATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTAT
TTTACGCCACAACAGACTAGCAGCTTTCTTAAATCTCCAACTCCTCCTCCTGCTTCTAAGCCACCAAGCCTTTCTCGGAA
GTCATCTGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTGTCACCTGCCAGCTCATCACAAAGAACCACGG
CCACCCAGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGAGCTCAGGCTTTGATG
AGTGGTTCAAACCCTATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGTGGCCTTCTACCCTC
AGGAAGTCTGCTACCAAATGCATTGCCCGGTGCAATGCAGGCAACTTCTCAAGCAGGTGTTCCATTTGGCTTAAAAAATA
CTTCAAGTCTCAGGCCCCTAAATCTGCTTCAGCTTCCAGGTGGTTCACTCATTTTTAACACTCTGCAGCAGCAGCAACAG
CAGCTCTCTCAGTTTACACCACAACAACCTCAGCAACCCACAACTTCTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGA
ACAAGGTTCAACCAGCCAAGAACAGGCCTTATCTGCTCAGCACGCTGCTGTTATTAACCTTGCTGGAGTAGGAAGTTTTA
TGCAGTCACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTC
CAGCTCTCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGC
AGCAGCAGCACAAACAGCTCAGCTACATCGTCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGC
CAACCACTCCAAAATTCTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 5 .96 RPM
SRP021940_cerebellum 17 .86 RPM
SRP021940_embryo 33 .81 RPM
SRP021940_placental_villous 15 .20 RPM
SRP021940_synovial_membrane 10 .76 RPM
SRP021940_testis 93 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000102710 ortholog_one2one 2 retrogenes
retro_hsap_4659, retro_hsap_4794,
Loxodonta africana ENSLAFG00000027507 ortholog_one2many 1 retrogene
retro_lafr_1199,
Macaca mulatta ENSMMUG00000003590 ortholog_one2one 2 retrogenes
retro_mmul_2479, retro_mmul_2555,
Pongo abelii ENSPPYG00000005288 ortholog_one2one 2 retrogenes
retro_pabe_3619, retro_pabe_3729,
Pan troglodytes ENSPTRG00000005791 ortholog_one2one 2 retrogenes
retro_ptro_3095, retro_ptro_3189,
Pteropus vampyrus ENSPVAG00000014609 ortholog_one2one 1 retrogene
retro_pvam_401,
Tarsius syrichta ENSTSYG00000013227 ortholog_one2one 1 retrogene
retro_tsyr_2160,
Vicugna pacos ENSVPAG00000007288 ortholog_one2one 1 retrogene
retro_vpac_193,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1052 63.52 93.07
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2. retro_ecab_1101 63.52 93.07
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Download FASTA sequences of all ENSECAG00000000116 retrocopies