Parental gene:

FAM48A, ENSPTRG00000005791

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:13:36635821..36687309(-)


>ENSPTRG00000005791
ATGCAACAAGCTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTATCAAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTGTATATTGAAGAATGTGAAAAAGAACCTGAAG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATGCAAGAGACTTTGTCATGTTTAGTGGTCAATCTA
TACCCAGGAAATGAGGGATATTCTCTGATGCTCAGGGGAAAAAACGGATCAGATTCCGAGACCATTCGACTGCCCTATGA
AGAAGGAGAGTTGCTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGCGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAACATGAAATCTCCTGGTTACCAA
AGTCGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATTTGTGATGTACATTCAATAACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTCATCCTAGCTACAGCTGAACCACTCTGTCTTGATCCTTCTATAG
CAGTCACCTGCACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACTCGCCCAATGAAACGGTGTTTCAAGAGG
TATTCCAGATCCTCTCTGAATCGGCAGCAAGATCTATCTCATTGTCCACCTCCTCCTCAGCTGAGGTTACTTGATTTCTT
ACAAAAAAGAAAGGAAAGAAAAGCAGGTCAGCATTATGACCTCAAAATTTCTAAGGCAGGAAATTGTGTAGATATGTGGA
AACGGAGTCCCTGTAATTTGGCCATACCTTCTGAAGTAGATGTGGAGAAATATGCTAAAGTGGAAAAGTCTATCAAATCT
GATGACTCACAGCCAACAGTCTGGCCAGCCCATGATGTAAAAGATGATTATGTATTTGAATGTGAAGCTGGTACTCAGTA
TCAGAAAACAAAGCTGACCATCTTGCAGTCGCTTGGAGATCCACTTTACTATGGTAAAATACAGCCATGTAAAGCAGATG
AAGAAAGTGACAGCCAGATGTCTCCATCACACTCGTCCACAGATGATCATTCAAATTGGTTCATTATTGGATCAAAGACC
GATGCTGAGAGGGTAGTCAATCAGTACCAGGAATTAGTCCAGAATGAAGCCAAATGTCCGGTCAAGATGTCACACAGCTC
CAGTGGCTCAGCCAGTCTGAGTCAGGTCTCTCCAGGGAAAGAAACAGATCAAACTGAAACCGTGTCAGTTCAGTCTTCGG
TATTGGGGAAGGGTGTAAAACATCGACCCCCACCAATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTAT
TTTACACCACAACAGACAAGCAGCTTTCTCAAATCTCCAACTCCTCCTCCTTCTTCTAAGCCATCAAGTATTCCTCGGAA
ATCATCTGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTATCACCTGCCAGCTCATCACAAAGAACCACGG
CCACCCAGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGGGCCCAGGCTTTGATG
AGTGGTTCAAACCCCATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGCGGCCTTCTACCCTC
AGGAGGTCTGCTACCAAATGCACTGCCCAGTGCAATGCAGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATA
CTTCAAGTCTCAGGCCCTTAAATCTACTCCAGCTTCCAGGTGGTTCACTTATTTTTAACACTCTGCAGCAGCAGCAACAG
CAGCTCTCCCAGTTTACACCACAACAACCTCAGCAGCCCACAACTTGTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGA
GCAAGGTTCAACCAGTCAAGAACAGGCCTTATCTGCTCAGCAAGCTGCTGTTATTAACCTTACTGGAGTAGGAAGTTTTA
TGCAGTCACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTC
CAGCTCTCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGC
AGCAGCAGCACAAACAGCTCAGCTACATCATCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGC
CAACCACTCCAAAATTTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .76 RPM
SRP007412_cerebellum 25 .88 RPM
SRP007412_heart 12 .30 RPM
SRP007412_kidney 21 .50 RPM
SRP007412_liver 7 .50 RPM
SRP007412_testis 210 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000000116 ortholog_one2one 2 retrogenes
retro_ecab_1052, retro_ecab_1101,
Homo sapiens ENSG00000102710 ortholog_one2one 2 retrogenes
retro_hsap_4659, retro_hsap_4794,
Loxodonta africana ENSLAFG00000027507 ortholog_one2many 1 retrogene
retro_lafr_1199,
Macaca mulatta ENSMMUG00000003590 ortholog_one2one 2 retrogenes
retro_mmul_2479, retro_mmul_2555,
Pongo abelii ENSPPYG00000005288 ortholog_one2one 2 retrogenes
retro_pabe_3619, retro_pabe_3729,
Pteropus vampyrus ENSPVAG00000014609 ortholog_one2one 1 retrogene
retro_pvam_401,
Tarsius syrichta ENSTSYG00000013227 ortholog_one2one 1 retrogene
retro_tsyr_2160,
Vicugna pacos ENSVPAG00000007288 ortholog_one2one 1 retrogene
retro_vpac_193,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_3095 63.36 63.29
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2. retro_ptro_3189 61.54 63.29
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Download FASTA sequences of all ENSPTRG00000005791 retrocopies