Parental gene:

FAM48A, ENSPPYG00000005288

Aliases:SUPT20H, FAM48A
Description:protein FAM48A [Source:RefSeq peptide;Acc:NP_001128975]
Organism:Orangutan (Pongo abelii)
Coordinates:13:36799366..36856306(-)


>ENSPPYG00000005288
ATGCAACAAGCTTTAGAACTAGCTTTGGATCGTGCAGAGTATGTCATTGAAAGTGCCCGACAGAGACCTCCTAAAAGGAA
ATACCTATCAAGTGGAAGAAAATCTGTATTTCAAAAACTTTATGACTTGTATATTGAAGAATGTGAAAAAGAACCTGAGG
TTAAGAAATTAAGAAGAAATGTGAACTTGTTAGAGAAGCTTGTTATGCAAGAGACTTTGTCATGTTTAGTGGTCAATCTA
TACCCAGGAAATGAGGGATATTCGCTGATGCTCAGGGGAAAAAACGGATCAGATTCCGAGACCATTCGCCTGCCCTATGA
AGAAGGAGAGTTGCTTGAATATTTGGATGCAGAAGAATTACCTCCTATTTTGGTTGATCTCCTAGAAAAATCTCAGGTTA
ATATTTTTCATTGCGGATGTGTCATAGCAGAAATACGTGACTACAGGCAGTCCAGTAACATGAAATCTCCTGGTTACCAA
AGTCGGCACATTCTCTTACGTCCAACAATGCAGACTTTAATTTGTGATGTACATTCAATAACAAGTGATAACCACAAATG
GACCCAGGAAGACAAACTTTTGCTTGAGAGCCAGCTCATCCTAGCTACAGCTGAACCACTCTGTCTTGATCCTTCTATAG
CAGTCACCTGTACTGCAAACAGACTGCTCTATAACAAGCAAAAGATGAACACTCGCCCAATGAAACGGTGTTTCAAGAGG
TATTCCAGATCCTCTCTGAATCGGCAGCAAGATCTATCTCATTGTCCACCTCCTCCTCAGCTGAGTTACTTGATTTCTTA
CAAAAAGAAAGGAAGAAAAGCAGGTCAGCATTATGACCTCAAATCTAAGGCAGGAAATTGTGTAGATATGTGGAAACGGA
GTCCCTGTAATTTGGCCATACCTTCTGAAGTAGATGTGGAGAAGTATGCTAAAGTGGAAAAGTCTATCAAATCTGATGAC
TCACAGCCAACAGTCTGGCCTGCCCATGATGTAAAAGATGATTATGTATTTGAATGTGAAGCTAGTACTCAGTATCAGAA
AACAAAGCTGACCATCTTGCAGTCGCTTGGAGATCCACTTTACTATGGTAAAATACAGCCATGTAAAGCAGATGAAGAAA
GTGACAGCCAGATGTCTCCATCACACTCGTCCACAGATGATCATTCAAACTGGTTCATTATTGGATCAAAGACCGATGCT
GAGAGGGTAGTCAATCAGTACCAAGAATTAGTCCAGAATGAAGCCAAATGTCCGGTCAAGATGTCACACAGCTCCAGTGG
CTCAGCCAGTCTGAGTCAGGTTTCTCCAGGGAAAGAAACAGAACAAACTGAAACTGTGTCAGTTCAGTCTTCAGTATTGG
GGAAGGGTGTAAAACATCGACCCCCACCAATCAAACTTCCCTCAAGCTCAGGAAATAGTTCCTCAGGTAACTATTTTACA
CCACAACAGACAAGCAGCTTTCTCAAATCTCCAACTCCTCCTCCTTCTTCTAAGCCACCAACTATTCCTCGGAAATCATC
TGTGGATCTCAATCAAGTTAGCATGCTTTCTCCAGCTGCCCTATCACCTGCCAGCTCATCACAAAGAACCACAGCCACCC
AGGTCATGGCAAACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGGGCCCAGGCTTTGATGAGTGGT
TCAAACCCCATGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAAACCTGAGCGGCCTTCTACCCTCAGGAGG
TCTGCTACCAAATGCATTGCCCAGTGCAATGCAGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATACTTCAA
GTCTCAGGCCCTTAAATCTACTCCAGCTTCCAGGTGGTTCACTTATTTTTAACACTCTGCAGCAGCAGCAACAGCAGCTC
TCCCAGTTTACACCACAACAACCTCAGCAGCCCACAACTTCTAGTCCTCAACAGCCAGGGGAGCAGGGTTCTGAACAAGG
TTCAACCAGTCAAGAACAGGCCTTATCTGCTCAGCAAGCTGCTGTTATTAACCTTACTGGAGTAGGAAGTTTCATGCAGT
CACAGGCAGCTGTGTTGTCTCAGCTTGGCTCTGCCGAGAACAGACCTGAGCAAAGCCTTCCTCAGCAGAGATTCCAGCTC
TCCTCTGCCTTTCAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGCAGCAGC
AGCACAAACAGCTCAGCTACATCATCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAGAGAGGCACGCCAACCA
CTCCAAAATTC

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .42 RPM
SRP007412_cerebellum 32 .95 RPM
SRP007412_heart 8 .46 RPM
SRP007412_kidney 18 .83 RPM
SRP007412_liver 13 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000000116 ortholog_one2one 2 retrogenes
retro_ecab_1052, retro_ecab_1101,
Homo sapiens ENSG00000102710 ortholog_one2one 2 retrogenes
retro_hsap_4659, retro_hsap_4794,
Loxodonta africana ENSLAFG00000027507 ortholog_one2many 1 retrogene
retro_lafr_1199,
Macaca mulatta ENSMMUG00000003590 ortholog_one2one 2 retrogenes
retro_mmul_2479, retro_mmul_2555,
Pan troglodytes ENSPTRG00000005791 ortholog_one2one 2 retrogenes
retro_ptro_3095, retro_ptro_3189,
Pteropus vampyrus ENSPVAG00000014609 ortholog_one2one 1 retrogene
retro_pvam_401,
Tarsius syrichta ENSTSYG00000013227 ortholog_one2one 1 retrogene
retro_tsyr_2160,
Vicugna pacos ENSVPAG00000007288 ortholog_one2one 1 retrogene
retro_vpac_193,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3619 61.87 63.19
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2. retro_pabe_3729 61.10 62.93
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Download FASTA sequences of all ENSPPYG00000005288 retrocopies