Parental gene:

RPS10, ENSECAG00000006430

Aliases:None
Description:ribosomal protein S10 [Source:HGNC Symbol;Acc:10383]
Organism:Horse (Equus caballus)
Coordinates:20:34666161..34671603(-)


>ENSECAG00000006430
ATGTTGATGCCCAAGAAGAACCGGGCCATTTATGAACTTCCTTTCAAGGAGGGAGTGATGGTGGCCAAGGACGTCCACAT
GCCCAAACACCCCGAGCTGGCAGACAAGAACGTGCCCAATCTTCACGTCATGAAGGCCATGCAGTCTCTCAAATCCCGAG
GCTACGTGAAGGAACAGTTTGCTTGGAGACATTTCTACTGGTACCTTACCAACGAGGGTATCCAGTATCTCCGGGATTAC
CTCCACCTGCCCCCTGAGATCGTGCCTGCCACCCTGCGCCGGAGCCGTCCTGAGACCGGCAGGCCACGGCCCAAAGGTCT
GGAGGGAGAGCGACCCGCAAGACTCACACGAGGGGAAGCCGACAGAGACACCTACAGACGAAGCGCTGTGCCCCCTGGTG
CTGACAAGAAAGCTGAGGCCGGGGCTGGGTCAGCAACTGAATTCCAGTTTAGAGGCGGATTTGGTCGTGGACGTGGTCAG
CCACCTCAGTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 540 .12 RPM
SRP021940_cerebellum 353 .14 RPM
SRP021940_embryo 596 .97 RPM
SRP021940_placental_villous 328 .45 RPM
SRP021940_synovial_membrane 454 .17 RPM
SRP021940_testis 365 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015250 possible_ortholog 4 retrogenes
retro_cjac_215, retro_cjac_296, retro_cjac_325, retro_cjac_63,
Homo sapiens ENSG00000124614 ortholog_one2one 24 retrogenes
retro_hsap_1509, retro_hsap_1628, retro_hsap_1630, retro_hsap_1657, retro_hsap_1923, retro_hsap_2003, retro_hsap_2113, retro_hsap_229, retro_hsap_2415, retro_hsap_2573, retro_hsap_2574, retro_hsap_2830, retro_hsap_289, retro_hsap_3007, retro_hsap_3170, retro_hsap_3243, retro_hsap_3436, retro_hsap_3454, retro_hsap_3720, retro_hsap_4114, retro_hsap_4190, retro_hsap_460, retro_hsap_869, retro_hsap_992,
Latimeria chalumnae ENSLACG00000017219 ortholog_one2one 1 retrogene
retro_lcha_26,
Loxodonta africana ENSLAFG00000008539 ortholog_one2one 1 retrogene
retro_lafr_756,
Macaca mulatta ENSMMUG00000000267 ortholog_one2one 2 retrogenes
retro_mmul_332, retro_mmul_555,
Monodelphis domestica ENSMODG00000013929 ortholog_one2one 2 retrogenes
retro_mdom_1889, retro_mdom_437,
Mus musculus ENSMUSG00000052146 possible_ortholog 9 retrogenes
retro_mmus_1376, retro_mmus_1500, retro_mmus_1831, retro_mmus_2431, retro_mmus_2551, retro_mmus_2708, retro_mmus_3651, retro_mmus_5, retro_mmus_858,
Oryctolagus cuniculus ENSOCUG00000011373 ortholog_one2one 2 retrogenes
retro_ocun_250, retro_ocun_874,
Pongo abelii ENSPPYG00000016516 possible_ortholog 2 retrogenes
retro_pabe_2319, retro_pabe_97,
Rattus norvegicus ENSRNOG00000000490 possible_ortholog 4 retrogenes
retro_rnor_169, retro_rnor_224, retro_rnor_359, retro_rnor_74,
Sarcophilus harrisii ENSSHAG00000000731 ortholog_one2one 3 retrogenes
retro_shar_243, retro_shar_334, retro_shar_724,
Ictidomys tridecemlineatus ENSSTOG00000013486 ortholog_one2one 5 retrogenes
retro_itri_1448, retro_itri_1515, retro_itri_230, retro_itri_787, retro_itri_963,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_198 72.36 71.78
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Download FASTA sequences of all ENSECAG00000006430 retrocopies