RetrogeneDB ID: | retro_itri_963 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393351.1:878353..878839(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS10 | ||
Ensembl ID: | ENSSTOG00000013486 | ||
Aliases: | None | ||
Description: | ribosomal protein S10 [Source:HGNC Symbol;Acc:10383] |
Percent Identity: | 70.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MLMPKKNRIAIYELL-FKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQS-LKSRGYVKEQFAWRHFY |
ML.PKKN.IAIYEL...KEG.M.AKKDV.MPKH.ELAD.NVP.LHV.KAMQS..KS.G.VKEQFAWRHFY | |
Retrocopy | MLFPKKNQIAIYELF<LKEGMMIAKKDVYMPKHLELADGNVPSLHVLKAMQS<FKS*GFVKEQFAWRHFY |
Parental | WYLTNEGIQ-YLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGAD |
WYL.NEGI..YL...L.L.PEIVPA.L..S.PETGR..PKGLEG..PARL.RGEA.RDT...SAVP.GA. | |
Retrocopy | WYLVNEGIH<YLCN*LFLLPEIVPAILHHS*PETGRLCPKGLEGKQPARLRRGEANRDTHGQSAVPSGAN |
Parental | KKAEAGAGSATEFQFRGGFGRGRGQPPQ |
KK...GAGSATE..FRG..G.G.GQ.PQ | |
Retrocopy | KK--VGAGSATELHFRGRWGCGHGQLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |