Parental gene:

AMZ2, ENSECAG00000011450

Aliases:None
Description:archaelysin family metallopeptidase 2 [Source:HGNC Symbol;Acc:28041]
Organism:Horse (Equus caballus)
Coordinates:11:12396433..12403363(-)


>ENSECAG00000011450
ATGCAAACAGTCCGGCACTCTGAACAGACACTAAAAACGGCTCTCATCTCAAAGAACCCGGCGCTCGTGTCACAGTATGA
GAAGTTAGATGCTGGGGAACGGCGTTTGATGAACCAAGCCTTCCAGCCAAACAGTGATCTCTTTGGACCCATTACCGTGC
ATTCCCGGTCAGATTGGATCACCTCCCATCCTGAGGATCCCCAAGACTTTGAACAGTTTTTCAGTGATCCTTACAGAAAG
ACACCCTCTCCAGAGAAACGCAGCATTTATATCCAGTGCATTGGATCTCTAGGAAACACCAGAGCTATCAGTGAAGAATA
TATTAAATGGCTCCAGGGCTACTGTGAAGCGTTTTTCTATGGCTTGACAGTAAAACTCCTAGCACCGGTTCCTGTCTCTG
CAACGAGATGTTCCTTTAGAGTCAATGATAGCACACAAAACCTACAGATTCATGCAGGACACATTCTGAAGTTCTTAAAA
AAGAAGAAACCTGGAGATGCCTTTTGTATTGTGGGAGTGACGATGATTGATCTTTACCCAAGAGACTCCTGGAATTTTGT
CTTTGGACAGGCCTCTTTGACAGATGGTGTGGGGATATTCAGCTTCGCCAGGTACGGCAGTGATTTCTATAGCTCACGCT
ACGAAGGCCGAGTGAAGAAGCCACAGAAAGTCTCTTCCAGTGACTATTCCGTTTTTGATAACTATTACATTCCCGAAGTG
ACTAGCGTTTTGCTGCTTCGGTCCTGTAAGACTTTAACCCATGAGATTGGACACATATTTGGACTTCGACACTGCCAGTG
GCTTGCCTGCCTAATGCAAGGCTCCAATCACCTGGAAGAAGCTGACCGGCGCCCCCTGAACCTTTGCCCCATCTGTTTAC
GCAAGTTGCAGTGTGCTATTGGCTTCAACATTGTAGAAAGATACAAAGCCCTGGTGCGGTGGATTGATGGTGCGTCTGCT
GACACACCCCGAGTCACTCCGAAACATAGTCGTGAGGATGATGTGAATTTGCCAAAACCTGTGGAAGCCTTTAAGGAATG
GAAAGAGTGGATAATAAAATGCCTTGCTGTTCTCCGAAAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 20 .90 RPM
SRP021940_cerebellum 29 .96 RPM
SRP021940_embryo 17 .90 RPM
SRP021940_placental_villous 10 .92 RPM
SRP021940_synovial_membrane 13 .07 RPM
SRP021940_testis 72 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009345 ortholog_one2one 1 retrogene
retro_btau_429,
Choloepus hoffmanni ENSCHOG00000000493 ortholog_one2one 1 retrogene
retro_chof_2462,
Callithrix jacchus ENSCJAG00000000254 ortholog_one2one 1 retrogene
retro_cjac_2798,
Cavia porcellus ENSCPOG00000013061 ortholog_one2one 1 retrogene
retro_cpor_1226,
Felis catus ENSFCAG00000019195 ortholog_one2one 1 retrogene
retro_fcat_760,
Myotis lucifugus ENSMLUG00000006771 ortholog_one2one 2 retrogenes
retro_mluc_1540, retro_mluc_2056,
Mustela putorius furo ENSMPUG00000014570 ortholog_one2one 1 retrogene
retro_mputfur_1224,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_440 65.42 59.17
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2. retro_ecab_864 72.95 56.67
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Download FASTA sequences of all ENSECAG00000011450 retrocopies