RetrogeneDB ID: retro_mluc_2056

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430006:159077..159710(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AMZ2
• Ensembl ID: ENSMLUG00000006771
• Aliases: None
• Description: None

Sequence

>retro_mluc_2056
GTCAATGATAGCACGGAGAACCTACAGACACATGCAGGGCACATCCTGCACTTCTTGAAAAAGAAGAAACCTGAAGATGC
CTTCTGCATTGTGGGAGTAACGATGATTGATCTTTACCCCAGAGACTCCTGGAATTTCGTCTTTGGACAGGCATCTTTGA
CAGATGGTGTGGGGATATTCAGCTTTGCCAGGTATGGCGGTGACTCTTACAGCTCAAGCAACAAAGGCAAAGTGAAGGCG
TCGCGGAGACAATCTTTGCGTGACTATTCGGTGTTTGATAACTATTACACTCCTGAAGTGACCAGTGTTCTGCTGCTTCG
GTCGTGCAAGACTTTAACCCATGAGATTGGACACATATTTGGACTTCGACACTGCCAGTGGCTGGCATGCCTAATGCAAG
GCTCCAACCACTTGGAAGAAGCTGACCGGCGCCCCCTAGATCTGTGTCCCATCTGTTTACGCAAGTTGCAATGTGCTATT
GGCGTCAACATTGTAGAAAGATACCAAGCAGCGGTGAGGCGGATTGATGATGAGTCTGCTGACACGCCCCGAGTTACTCC
GAAACATAGTCATGACGGGAATGGGAATTTGCCGAAACCTGTGGAAGCCTTTATGCCATGGTGCCAGTTTGTC

Alignment

ORF - retro_mluc_2056 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.98 %
• Parental protein coverage: 58.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VNDSTENLQIHAVGHILHFLKKKKPEDAFCIVGVTMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGGDF
          VNDSTENLQ.HA.GHILHFLKKKKPEDAFCIVGVTMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGGD.
Retrocopy VNDSTENLQTHA-GHILHFLKKKKPEDAFCIVGVTMIDLYPRDSWNFVFGQASLTDGVGIFSFARYGGDS

Parental  YSSSYKGKVKASQRQSSRDYSVFDNYYTPEVTSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLE
          YSSS.KGKVKAS.RQS.RDYSVFDNYYTPEVTSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLE
Retrocopy YSSSNKGKVKASRRQSLRDYSVFDNYYTPEVTSVLLLRSCKTLTHEIGHIFGLRHCQWLACLMQGSNHLE

Parental  EADRRPLDLCPICLRKLQCAIGFNIVERYQALVRWIDDESADTPRVTPKRSHDGNVNLPKPVEAFKEWKE
          EADRRPLDLCPICLRKLQCAIG.NIVERYQA.VR.IDDESADTPRVTPK.SHDGN.NLPKPVEAF..W..
Retrocopy EADRRPLDLCPICLRKLQCAIGVNIVERYQAAVRRIDDESADTPRVTPKHSHDGNGNLPKPVEAFMPWCQ

Parental  WI
          ..
Retrocopy FV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2056 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009345	1 retrocopy	retro_btau_429,
Choloepus hoffmanni	ENSCHOG00000000493	1 retrocopy	retro_chof_2462,
Callithrix jacchus	ENSCJAG00000000254	1 retrocopy	retro_cjac_2798,
Cavia porcellus	ENSCPOG00000013061	1 retrocopy	retro_cpor_1226,
Equus caballus	ENSECAG00000011450	2 retrocopies	retro_ecab_440, retro_ecab_864,
Felis catus	ENSFCAG00000019195	1 retrocopy	retro_fcat_760,
Myotis lucifugus	ENSMLUG00000006771	2 retrocopies	retro_mluc_1540, retro_mluc_2056 ,
Mustela putorius furo	ENSMPUG00000014570	1 retrocopy	retro_mputfur_1224,