Parental gene:

CDK2AP2, ENSECAG00000020079

Aliases:None
Description:cyclin-dependent kinase 2 associated protein 2 [Source:HGNC Symbol;Acc:30833]
Organism:Horse (Equus caballus)
Coordinates:12:27242762..27244008(-)


>ENSECAG00000020079
ATGTCCTACAAACCCATCGCCCCCGCCCCCAGCAGCACCCCCGGCTCCAGCACTCCTGGGCCCGGCACCCCGGTTCCTAC
AGGAAGCGTCCCATCGCCGTCGGGCTCGGTGCCGGGAGCAGCTGCCCCTTTCAGACCGCTGTTTAACGACTTTGGACCGC
CTTCCATGGGCTACGTGCAGGCAATGAAGCCACCTGGTGCCCAGGGCTCCCAGAGCACCTACACAGACCTGCTGTCGGTC
ATAGAGGAGATGGGCAAAGAGATCCGGCCTACCTATGCTGGCAGCAAGAGCGCCATGGAGCGCCTGAAGAGAGGCATCAT
CCATGCCCGGGCCCTAGTCAGAGAGTGCCTGGCAGAGACAGAGCGGAATGCCCGCACGTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 8 .32 RPM
SRP021940_cerebellum 18 .75 RPM
SRP021940_embryo 14 .63 RPM
SRP021940_placental_villous 28 .72 RPM
SRP021940_synovial_membrane 22 .10 RPM
SRP021940_testis 12 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000011370 ortholog_one2one 1 retrogene
retro_cfam_55,
Echinops telfairi ENSETEG00000006428 ortholog_one2one 3 retrogenes
retro_etel_257, retro_etel_334, retro_etel_437,
Homo sapiens ENSG00000167797 ortholog_one2one 4 retrogenes
retro_hsap_3699, retro_hsap_4172, retro_hsap_4176, retro_hsap_4268,
Gorilla gorilla ENSGGOG00000010159 ortholog_one2one 3 retrogenes
retro_ggor_2502, retro_ggor_2799, retro_ggor_2800,
Macaca mulatta ENSMMUG00000011827 ortholog_one2one 5 retrogenes
retro_mmul_1712, retro_mmul_640, retro_mmul_728, retro_mmul_730, retro_mmul_763,
Nomascus leucogenys ENSNLEG00000006438 ortholog_one2one 1 retrogene
retro_nleu_176,
Otolemur garnettii ENSOGAG00000008275 ortholog_one2one 1 retrogene
retro_ogar_1584,
Pan troglodytes ENSPTRG00000003966 ortholog_one2one 9 retrogenes
retro_ptro_2508, retro_ptro_2973, retro_ptro_2976, retro_ptro_3002, retro_ptro_3003, retro_ptro_3004, retro_ptro_3005, retro_ptro_3008, retro_ptro_3009,
Tupaia belangeri ENSTBEG00000005476 ortholog_one2one 2 retrogenes
retro_tbel_439, retro_tbel_612,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_180 71.43 97.62
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2. retro_ecab_579 52.63 73.81
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Download FASTA sequences of all ENSECAG00000020079 retrocopies