Parental gene: | CDK2AP2, ENSPTRG00000003966 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:65469281..65471414(-) |
>ENSPTRG00000003966
ATGTCCTACAAACCCATCGCCCCTGCTCCCAGCAGCACCCCTGGCTCCAGCACCCCTGGGCCGGGCACCCCGGTCCCTAC
AGGAAGCGTCCCGTCGCCGTCGGGCTCAGTGCCAGGAGCCGGCGCTCCTTTTAGACCGCTGTTTAACGACTTTGGACCGC
CTTCCATGGGCTACGTGCAGGCGATGAAGCCACCCGGCGCCCAGGGCTCCCAGAGCACCTACACGGACCTGCTGTCAGTC
ATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGCAGCAAGAGCGCCATGGAGCGCCTGAAGAGAGGTATCAT
CCATGCCCGGGCGCTAGTCAGAGAGTGCCTGGCAGAGACAGAGCGGAACGCCCGCACGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .84 RPM |
| SRP007412_cerebellum | 9 .57 RPM |
| SRP007412_heart | 5 .65 RPM |
| SRP007412_kidney | 31 .23 RPM |
| SRP007412_liver | 45 .01 RPM |
| SRP007412_testis | 1 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000011370 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000020079 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000006428 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000167797 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010159 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000011827 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006438 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000008275 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005596 | within_species_paralog | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000005476 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2508 | 89.90 | 77.78 | Please wait, loading  |
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| 2. | retro_ptro_2973 | 84.26 | 85.71 | Please wait, loading |
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| 3. | retro_ptro_2976 | 82.57 | 85.71 | Please wait, loading |
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| 4. | retro_ptro_3002 | 82.24 | 84.13 | Please wait, loading |
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| 5. | retro_ptro_3003 | 84.26 | 85.71 | Please wait, loading |
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| 6. | retro_ptro_3004 | 84.26 | 85.71 | Please wait, loading |
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| 7. | retro_ptro_3005 | 81.48 | 85.71 | Please wait, loading |
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| 8. | retro_ptro_3008 | 85.19 | 85.71 | Please wait, loading |
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| 9. | retro_ptro_3009 | 85.19 | 85.71 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000003966 retrocopies