Parental gene:

ODC1, ENSECAG00000022690

Aliases:None
Description:ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109]
Organism:Horse (Equus caballus)
Coordinates:15:83085471..83090271(+)


>ENSECAG00000022690
ATGAACAACTTTAGTAATGGAGAGTTTGACTGCCATTTTCTCGATGAAGGCTTTACTGCCAAGGACATTCTGGACCAAAA
AATTAATGAAGTTTCTTCTTCTGATGATAAGGATGCCTTCTATGTTGCGGACCTGGGAGACATTCTAAAGAAGCACCTGA
GGTGGTTAAAAGCTCTTCCTCGGGTCACCCCCTTCTATGCAGTCAAGTGCAATGACAGCAGAACCATCGTGAAGACGCTG
GCTGCCATCGGGACCGGGTTTGACTGTGCCAGCAAGACTGAAATACAACTGGTGCAGAGTCTCGGGGTGCCTCCGGAGAG
GATTATCTACGCAAATCCTTGTAAACAAGTGTCCCAGATTAAGTATGCTGCCAATAACGGAGTCCAGATGATGACTTTTG
ATAGTGAGGTCGAGTTGATGAAAGTTGCCCGGGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCTACCGATGATTCC
AAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAACCAGCAGGCTTCTTTTGGAACGGGCGAAAGAGCT
AAATATTGACGTCATTGGTGTCAGCTTCCATGTGGGAAGTGGCTGCACTGACCCGGAGACCTTCGTGCAGGCCATCTCTG
ATGCCCGCTGTGTCTTTGACATGGGGGCTGAGATTGGTTTCAACATGTATCTGCTTGATATTGGTGGTGGCTTTCCTGGA
TCTGAGGATGTAAAGCTTAAATTTGAAGAGGTCACCAGTGTGATCAACCCAGCGCTGGATAAATATTTTCCGTCAGACTC
GGGAGTGAGAGTCATAGCTGAGCCAGGCAGATACTACGTTGCATCAGCTTTCACGCTCGCAGTTAATATCATTGCGAAAA
AACTCGTATTAAAGGAACAAACAGGATCTGATGATGAAGATGAGTCGAGTGAACAGACCTTTATGTATTACGTGAACGAT
GGAGTATATGGATCATTTAATTGCATCCTTTATGATCATGCACACGTGAAGCCTCTTCTGCAAAAGAGACCCAAACCAGA
TGAGAAGTATTATTCATCCAGCATATGGGGACCGACGTGTGACGGCCTCGATCGCATTGTTGAGCGCTGTAACTTGCCCG
AAATGCAGGTGGGCGATTGGATGCTCTTTGAAAACATGGGCGCTTATACTGTTGCTGCTGCTTCGACTTTCAATGGATTC
CAGAGGCCAACTATCTACTATGTCATGTCAGGGCCAACATGGCAACTGATGCAGCAAATCCAGAACCACGACTTCCCGCC
TGAAGTGGAGGAGCAGGACGTCAGCACTCTGCCTGTGTCCTGTGCTTGGGAGAGTGGGATGAAGCGGCACCCAGCAGCCT
GTGCTTCGGCCAGCATTAACGTGTAG

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 25 .26 RPM
SRP021940_cerebellum 25 .08 RPM
SRP021940_embryo 146 .81 RPM
SRP021940_placental_villous 82 .70 RPM
SRP021940_synovial_membrane 41 .15 RPM
SRP021940_testis 260 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011415 possible_ortholog 1 retrogene
retro_amel_414,
Bos taurus ENSBTAG00000004256 ortholog_one2one 1 retrogene
retro_btau_552,
Choloepus hoffmanni ENSCHOG00000010898 ortholog_one2one 2 retrogenes
retro_chof_1618, retro_chof_2111,
Dasypus novemcinctus ENSDNOG00000018474 possible_ortholog 31 retrogenes
retro_dnov_1032, retro_dnov_1128, retro_dnov_1129, retro_dnov_1137, retro_dnov_1212, retro_dnov_1235, retro_dnov_1418, retro_dnov_1434, retro_dnov_1493, retro_dnov_1594, retro_dnov_1595, retro_dnov_1677, retro_dnov_1778, retro_dnov_1810, retro_dnov_1813, retro_dnov_2016, retro_dnov_2027, retro_dnov_2108, retro_dnov_2147, retro_dnov_2180, retro_dnov_2212, retro_dnov_2461, retro_dnov_2551, retro_dnov_2564, retro_dnov_392, retro_dnov_740, retro_dnov_766, retro_dnov_781, retro_dnov_923, retro_dnov_943, retro_dnov_958,
Equus caballus ENSECAG00000016922 within_species_paralog 1 retrogene
retro_ecab_1096,
Loxodonta africana ENSLAFG00000005330 ortholog_one2one 2 retrogenes
retro_lafr_218, retro_lafr_850,
Myotis lucifugus ENSMLUG00000010423 ortholog_one2many 1 retrogene
retro_mluc_281,
Macaca mulatta ENSMMUG00000020441 possible_ortholog 2 retrogenes
retro_mmul_157, retro_mmul_1645,
Monodelphis domestica ENSMODG00000014779 ortholog_one2many 1 retrogene
retro_mdom_262,
Ictidomys tridecemlineatus ENSSTOG00000000386 possible_ortholog 2 retrogenes
retro_itri_1751, retro_itri_801,
Tursiops truncatus ENSTTRG00000004611 ortholog_one2one 3 retrogenes
retro_ttru_1940, retro_ttru_731, retro_ttru_843,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_957 89.59 100.00
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2. retro_ecab_1002 86.54 81.78
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Download FASTA sequences of all ENSECAG00000022690 retrocopies