RetrogeneDB ID: | retro_chof_1618 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_342792:498..1325(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ODC1 | ||
Ensembl ID: | ENSCHOG00000010898 | ||
Aliases: | None | ||
Description: | ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:8109] |
Percent Identity: | 83.03 % |
Parental protein coverage: | 59.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVEMMTFDSEVELMKVARSHPKARLVLRIATDDSK |
KTEIQLVQSL.VPPERIIYANPC.QVS.IKY.A.NGVEMM.FDSEVELMKVARSHPKARL.L..ATD..K | |
Retrocopy | KTEIQLVQSLRVPPERIIYANPCNQVSIIKYVAKNGVEMMMFDSEVELMKVARSHPKARLILHTATDETK |
Parental | AVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAISDARCVFDMGA-VGFSMYL |
AVC.LSVKFGATLK.SR.LLE..K.L.IDVIGVSFHVG..CT.PETF.QAISDA.CVFDMGA.VGFSMYL | |
Retrocopy | AVCCLSVKFGATLKSSRFLLECTKKLDIDVIGVSFHVGRSCTVPETFLQAISDACCVFDMGAEVGFSMYL |
Parental | LD-GGGFP-SDDVKLKL-RITNVINPALDKYFPSDSGVKIIAEPGRYYVASAFTLAVNIIAKKLVLKEQT |
...GGGFP.S.DVKLK...IT.VINPALDKYFPSDSGVKIIA.PGRYYVA.AFTL.VNIIAK.LVLKEQT | |
Retrocopy | FEIGGGFPGSNDVKLKFEEITSVINPALDKYFPSDSGVKIIADPGRYYVALAFTLPVNIIAKILVLKEQT |
Parental | GSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKNYSSSIW-GPTCDGLDRIV |
GSDDEDE.SEQTFMY..NDGVYGSFNCILYDH.HVKPLLQKRPKP.EK.YSSSIW...TCDGLD.IV | |
Retrocopy | GSDDEDELSEQTFMYHMNDGVYGSFNCILYDHSHVKPLLQKRPKPEEKYYSSSIW<ALTCDGLD*IV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |