Parental gene:

PCNA, ENSEEUG00000003069

Aliases:None
Description:proliferating cell nuclear antigen [Source:HGNC Symbol;Acc:8729]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3644:983..7479(-)


>ENSEEUG00000003069
ATGTTCGAGGCACGCCTGGTCCAGGGCTCCATCCTGAAAAAAGTGCTGGAAGCACTTAAAGATCTCATCAACGAGGCCTG
CTGGGACATCAGCTCTAGCGGCGTGAACCTGCAGAGCATGGACTCGTCTCACGTCTCCTTGGTGCAGCTCACCCTACGCT
CAGAGGGCTTCGACACGTACCGCTGCGACCGCAACCTGGCCATGGGCGTGAACCTCACCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAGAATACA
GTTGTGTAGTAAAGATGCCTTCTGGTGAATTTGCACGTATATGCCGAGATCTCAGTCATATTGGAGATGCTGTTGTAATT
TCCTGTGCAAAAGATGGAGTGAAATTTTCTGCAAGTGGAGAACTTGGGAATGGAAACATTAAGCTGTCACAAACAAGCAA
TGTTGATAAAGAAGAGGAAGCTNNNNNNNNNNNNNNNAATGAAACAGTTCAGCTAACTGGGGCACTGAGGCTGAACTTCT
TCACAAAAGCGACTCCTCTCTGTTCTACGGTAACACTCAGTATGGCAGATGTACCTCTCGTTGTCGAGTATAAATTTGCC
GATATGGCGCCTTCAAAGTACTATTCGGCTCCCAAGCTTGAAGATGAAGAAAAATCATAG

Library Parental gene expression (RPM)
SRP017611_liver 7 .23 RPM
SRP017611_kidney 15 .94 RPM
SRP017611_brain 5 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009089 ortholog_one2one 1 retrogene
retro_amel_1719,
Canis familiaris ENSCAFG00000006030 ortholog_one2one 2 retrogenes
retro_cfam_1626, retro_cfam_946,
Callithrix jacchus ENSCJAG00000021278 ortholog_one2one 3 retrogenes
retro_cjac_2159, retro_cjac_2175, retro_cjac_930,
Cavia porcellus ENSCPOG00000009242 ortholog_one2one 1 retrogene
retro_cpor_315,
Echinops telfairi ENSETEG00000006577 ortholog_one2many 3 retrogenes
retro_etel_1152, retro_etel_1539, retro_etel_2217,
Felis catus ENSFCAG00000009068 ortholog_one2one 2 retrogenes
retro_fcat_1363, retro_fcat_1729,
Homo sapiens ENSG00000132646 ortholog_one2one 3 retrogenes
retro_hsap_3067, retro_hsap_4817, retro_hsap_857,
Gorilla gorilla ENSGGOG00000001695 ortholog_one2many 2 retrogenes
retro_ggor_2107, retro_ggor_700,
Myotis lucifugus ENSMLUG00000001693 ortholog_one2one 1 retrogene
retro_mluc_1658,
Macaca mulatta ENSMMUG00000013259 ortholog_one2one 3 retrogenes
retro_mmul_1059, retro_mmul_1960, retro_mmul_2570,
Monodelphis domestica ENSMODG00000011649 ortholog_one2one 1 retrogene
retro_mdom_933,
Mustela putorius furo ENSMPUG00000006195 ortholog_one2one 2 retrogenes
retro_mputfur_330, retro_mputfur_629,
Mus musculus ENSMUSG00000027342 ortholog_one2many 1 retrogene
retro_mmus_114,
Nomascus leucogenys ENSNLEG00000007726 ortholog_one2one 2 retrogenes
retro_nleu_2192, retro_nleu_424,
Otolemur garnettii ENSOGAG00000033161 ortholog_one2one 2 retrogenes
retro_ogar_1258, retro_ogar_2960,
Procavia capensis ENSPCAG00000010500 ortholog_one2one 1 retrogene
retro_pcap_130,
Pongo abelii ENSPPYG00000010795 ortholog_one2one 3 retrogenes
retro_pabe_2542, retro_pabe_3745, retro_pabe_690,
Pan troglodytes ENSPTRG00000013222 ortholog_one2one 3 retrogenes
retro_ptro_2068, retro_ptro_3206, retro_ptro_595,
Pteropus vampyrus ENSPVAG00000002865 ortholog_one2one 1 retrogene
retro_pvam_193,
Rattus norvegicus ENSRNOG00000021264 ortholog_one2one 1 retrogene
retro_rnor_1035,
Sorex araneus ENSSARG00000004070 ortholog_one2one 1 retrogene
retro_sara_640,
Sus scrofa ENSSSCG00000030642 ortholog_one2one 1 retrogene
retro_sscr_113,
Tursiops truncatus ENSTTRG00000015368 ortholog_one2one 2 retrogenes
retro_ttru_1868, retro_ttru_440,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_358 78.20 50.19
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Download FASTA sequences of all ENSEEUG00000003069 retrocopies