Parental gene:

PCNA, ENSPTRG00000013222

Aliases:None
Description:Proliferating cell nuclear antigen [Source:UniProtKB/TrEMBL;Acc:H2QJX3]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:4983268..4988320(-)


>ENSPTRG00000013222
ATGTTCGAGGCGCGCCTGGTCCAGGGCTCCATCCTCAAGAAGGTGTTGGAGGCACTCAAGGACCTCATCAACGAGGCCTG
CTGGGACATTAGCTCCAGCGGCGTAAACCTGCAGAGCATGGACTCGTCCCACGTCTCTTTGGTGCAGCTCACCCTGCGGT
CTGAGGGCTTCGACACCTACCGCTGCGACCGCAACCTGGCCATGGGCGTGAACCTCACCAGTATGTCCAAAATCCTCAAA
TGCGCCGGCAATGAAGATATCATTACACTAAGGGCCGAAGATAACGCGGATACCTTGGCGCTGGTATTTGAAGCACCAAA
CCAGGAGAAAGTTTCAGACTATGAAATGAAGTTGATGGACTTAGATGTTGAACAACTTGGAATTCCAGAACAGGAGTACA
GCTGTGTAGTAAAGATGCCTTCTGGTGAATTTGCACGTATATGCCGAGATCTCAGCCATATTGGAGATGCTGTTGTAATT
TCCTGTGCAAAAGACGGAGTGAAATTTTCTGCAAGTGGAGAACTTGGAAATGGAAACATTAAATTGTCACAGACAAGTAA
TGTCGATAAAGAGGAGGAAGCTGTTACCATAGAGATGAATGAACCAGTTCAACTAACTTTTGCACTGAGGTACCTGAACT
TCTTTACAAAAGCCACTCCACTCTCTTCAACGGTGACACTCAGTATGTCTGCAGATGTACCCCTTGTTGTAGAGTATAAA
ATTGCTGATATGGGACACTTAAAATACTACTTGGCTCCCAAGATCGAGGATGAAGAAGGATCTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .03 RPM
SRP007412_cerebellum 14 .30 RPM
SRP007412_heart 12 .80 RPM
SRP007412_kidney 26 .54 RPM
SRP007412_liver 15 .06 RPM
SRP007412_testis 55 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009089 ortholog_one2one 1 retrogene
retro_amel_1719,
Canis familiaris ENSCAFG00000006030 ortholog_one2one 2 retrogenes
retro_cfam_1626, retro_cfam_946,
Callithrix jacchus ENSCJAG00000021278 ortholog_one2one 3 retrogenes
retro_cjac_2159, retro_cjac_2175, retro_cjac_930,
Cavia porcellus ENSCPOG00000009242 ortholog_one2one 1 retrogene
retro_cpor_315,
Erinaceus europaeus ENSEEUG00000003069 ortholog_one2one 1 retrogene
retro_eeur_358,
Echinops telfairi ENSETEG00000006577 ortholog_one2many 3 retrogenes
retro_etel_1152, retro_etel_1539, retro_etel_2217,
Felis catus ENSFCAG00000009068 ortholog_one2one 2 retrogenes
retro_fcat_1363, retro_fcat_1729,
Homo sapiens ENSG00000132646 ortholog_one2one 3 retrogenes
retro_hsap_3067, retro_hsap_4817, retro_hsap_857,
Gorilla gorilla ENSGGOG00000001695 ortholog_one2one 2 retrogenes
retro_ggor_2107, retro_ggor_700,
Myotis lucifugus ENSMLUG00000001693 ortholog_one2one 1 retrogene
retro_mluc_1658,
Macaca mulatta ENSMMUG00000013259 ortholog_one2one 3 retrogenes
retro_mmul_1059, retro_mmul_1960, retro_mmul_2570,
Monodelphis domestica ENSMODG00000011649 ortholog_one2one 1 retrogene
retro_mdom_933,
Mustela putorius furo ENSMPUG00000006195 ortholog_one2one 2 retrogenes
retro_mputfur_330, retro_mputfur_629,
Mus musculus ENSMUSG00000027342 ortholog_one2many 1 retrogene
retro_mmus_114,
Nomascus leucogenys ENSNLEG00000007726 ortholog_one2one 2 retrogenes
retro_nleu_2192, retro_nleu_424,
Otolemur garnettii ENSOGAG00000033161 ortholog_one2one 2 retrogenes
retro_ogar_1258, retro_ogar_2960,
Procavia capensis ENSPCAG00000010500 ortholog_one2one 1 retrogene
retro_pcap_130,
Pongo abelii ENSPPYG00000010795 ortholog_one2one 3 retrogenes
retro_pabe_2542, retro_pabe_3745, retro_pabe_690,
Pteropus vampyrus ENSPVAG00000002865 ortholog_one2one 1 retrogene
retro_pvam_193,
Rattus norvegicus ENSRNOG00000021264 ortholog_one2one 1 retrogene
retro_rnor_1035,
Sorex araneus ENSSARG00000004070 ortholog_one2one 1 retrogene
retro_sara_640,
Sus scrofa ENSSSCG00000030642 ortholog_one2one 1 retrogene
retro_sscr_113,
Tursiops truncatus ENSTTRG00000015368 ortholog_one2one 2 retrogenes
retro_ttru_1868, retro_ttru_440,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_595 77.64 93.87
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2. retro_ptro_2068 67.63 90.04
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3. retro_ptro_3206 84.27 68.20
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Download FASTA sequences of all ENSPTRG00000013222 retrocopies