RetrogeneDB ID: | retro_mmul_2570 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:43880833..43881611(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000023271 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4088 | ||
Ensembl ID: | ENSMMUG00000013259 | ||
Aliases: | None | ||
Description: | proliferating cell nuclear antigen [Source:RefSeq peptide;Acc:NP_001253019] |
Percent Identity: | 79.69 % |
Parental protein coverage: | 99.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGV |
MF.ARLVQGS.LKK.LEALKDLIN.ACWDI..SGVNLQS.DSSHVSL.Q.TL.SEGFDTYRCD.NLAMG. | |
Retrocopy | MFQARLVQGSVLKKALEALKDLINDACWDINLSGVNLQSLDSSHVSLMQFTLPSEGFDTYRCDCNLAMGT |
Parental | NLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMP |
NL...SKILKCAGNEDI.TLR.ED..DTL.L.FEA.NQEK.SDYE.K.M.LDVEQLGI.EQEY....KMP | |
Retrocopy | NLSIISKILKCAGNEDIVTLRTEDSVDTLVLLFEASNQEKFSDYEIKSMNLDVEQLGIAEQEYHSIAKMP |
Parental | SGEFARIC-RDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFAL |
S.EF..IC...LSHIGDAVVISC.KDG.KFSASG.LGNGN.KLSQ.S.VDKEEEAVT..MNEPVQLTFAL | |
Retrocopy | SDEFSCIC>YYLSHIGDAVVISCVKDGIKFSASGDLGNGN-KLSQASTVDKEEEAVTMGMNEPVQLTFAL |
Parental | RYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEEG |
RYLNF.TKATPLSS.V.L.MSAD..LVV.YKIADMGHLKYYLAPKI.DEEG | |
Retrocopy | RYLNFLTKATPLSSMVALNMSADIHLVVDYKIADMGHLKYYLAPKIKDEEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .64 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .56 RPM |
SRP007412_heart | 0 .00 RPM | 5 .54 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .43 RPM |
SRP007412_liver | 0 .00 RPM | 10 .65 RPM |
SRP007412_testis | 0 .00 RPM | 41 .16 RPM |