Parental gene:

NEDD8, ENSEEUG00000011640

Aliases:None
Description:neural precursor cell expressed, developmentally down-regulated 8 [Source:HGNC Symbol;Acc:7732]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_1188:181680..195473(-)


>ENSEEUG00000011640
ATGCTTATTAAAGTGAAGACGCTGACCGGCAAGGAGATTGAAATTGACATTGAGCCCACAGACAAGGTGGAGCGAATCAA
GGAGCGCGTGGAAGAAAAAGAGGGTATCCCCCCACAGCAGCAGAGGCTCATCTATAGTGGTAAACAGATGAATGATGAGA
AGACAGCAGCTGATTACAAGATCCTAGGTGGTTCAGTCCTCCATCTGGTGTTGGCTCTGAGAGGAGGAGGTGGTCTTAGG
CAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 39 .80 RPM
SRP017611_kidney 60 .39 RPM
SRP017611_liver 27 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000038842 possible_ortholog 1 retrogene
retro_btau_89,
Choloepus hoffmanni ENSCHOG00000001228 ortholog_one2one 5 retrogenes
retro_chof_1012, retro_chof_1616, retro_chof_2696, retro_chof_613, retro_chof_788,
Callithrix jacchus ENSCJAG00000006876 ortholog_one2many 1 retrogene
retro_cjac_4064,
Echinops telfairi ENSETEG00000018391 ortholog_one2one 2 retrogenes
retro_etel_1118, retro_etel_1677,
Homo sapiens ENSG00000129559 ortholog_one2one 1 retrogene
retro_hsap_180,
Macaca mulatta ENSMMUG00000029409 ortholog_one2one 1 retrogene
retro_mmul_2236,
Monodelphis domestica ENSMODG00000003254 ortholog_one2one 1 retrogene
retro_mdom_1681,
Vicugna pacos ENSVPAG00000009104 ortholog_one2one 4 retrogenes
retro_vpac_270, retro_vpac_316, retro_vpac_480, retro_vpac_558,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_43 52.05 88.89
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2. retro_eeur_165 52.05 88.89
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Download FASTA sequences of all ENSEEUG00000011640 retrocopies