Parental gene: | RPL18A, ENSFCAG00000007518 |
| Aliases: | None |
| Description: | ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] |
| Organism: | Cat (Felis catus) |
| Coordinates: | A2:12895644..12899711(+) |
>ENSFCAG00000007518
ATGAAGGCCTCGGGCACGCTGCGGGAGTACAAGGTGGTGGGGCGCTGTCTGCCCACCCCCAAGTGCCGCACTCCACCGCT
GTATCGCATGCGAATCTTCGCACCTAATCATGTTGTCGCCAAGTCCCGCTTCTGGTACTTTGTGTCTCAGCTGAAGAAGA
TGAAGAAGTCTTCAGGGGAAATTGTCTACTGTGGGCAGGTGTTCGAGAAATCCCCCTTGCGGGTGAAGAACTTCGGCATC
TGGCTGCGCTACGACTCCCGCAGCGGCACCCACAACATGTACCGGGAGTACCGGGACCTGACGACCGCGGGCGCCGTCAC
CCAGTGCTACCGAGACATGGGTGCCCGGCACCGTGCCCGGGCCCACTCGATCCAGATCATGAAGGTGGAGGAGATCGCAG
CCAGCAAGTGCCGCCGCCCGGCAGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGT
CGCCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTTTAG
ATGAAGGCCTCGGGCACGCTGCGGGAGTACAAGGTGGTGGGGCGCTGTCTGCCCACCCCCAAGTGCCGCACTCCACCGCT
GTATCGCATGCGAATCTTCGCACCTAATCATGTTGTCGCCAAGTCCCGCTTCTGGTACTTTGTGTCTCAGCTGAAGAAGA
TGAAGAAGTCTTCAGGGGAAATTGTCTACTGTGGGCAGGTGTTCGAGAAATCCCCCTTGCGGGTGAAGAACTTCGGCATC
TGGCTGCGCTACGACTCCCGCAGCGGCACCCACAACATGTACCGGGAGTACCGGGACCTGACGACCGCGGGCGCCGTCAC
CCAGTGCTACCGAGACATGGGTGCCCGGCACCGTGCCCGGGCCCACTCGATCCAGATCATGAAGGTGGAGGAGATCGCAG
CCAGCAAGTGCCGCCGCCCGGCAGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGT
CGCCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 56 .91 RPM |
| SRP017611_kidney | 103 .88 RPM |
| SRP017611_brain | 25 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000003125 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000015831 | possible_ortholog | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000015122 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014006 | possible_ortholog | 7 retrogenes | |
| Cavia porcellus | ENSCPOG00000015205 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000015258 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000002870 | possible_ortholog | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000003228 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000028844 | possible_ortholog | 6 retrogenes | |
| Monodelphis domestica | ENSMODG00000019167 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015786 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000009725 | possible_ortholog | 10 retrogenes | |
| Pan troglodytes | ENSPTRG00000010686 | possible_ortholog | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000017378 | ortholog_one2one | 6 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000000406 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000013889 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008977 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_fcat_267 | 76.19 | 70.45 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_fcat_831 | 66.00 | 56.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_fcat_1190 | 71.02 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_fcat_1213 | 66.92 | 73.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_fcat_1716 | 54.55 | 74.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_fcat_1848 | 67.78 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSFCAG00000007518 retrocopies